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Hickman H., Ver Hoef W., Hastak S., Neville J., Clunie D., Wagner U., Helton E. (2019). SDTM datasets of clinical data and measurements for selected cancer collections to TCIA [Dataset]. The Cancer Imaging Archive. doi: 10.7937/TCIA.2019.zfv154m9 |
Description
The Data Integration & Imaging Informatics (DI-Cubed) project explored the issue of lack of standardized data capture at the point of data creation, as reflected in the non-image data accompanying various 4 TCIA breast cancer collections (Multi-center breast DCE-MRI data and segmentations from patients in the Ivy-GAP I-SPY 1/ACRIN 6657 trials (ISPY1), BREAST-DIAGNOSIS, Single site breast DCE-MRI data and segmentations from patients undergoing neoadjuvant chemotherapy (Breast-MRI-NACT-Pilot), The Cancer Genome Atlas Breast Invasive Carcinoma Collection (TCGA-BRCA)) and the Ivy Glioblastoma Atlas Project (IvyGAP) brain cancer collection. The work addressed the desire for semantic interoperability between various NCI initiatives by aligning on common clinical metadata elements and supporting use cases that connect clinical, imaging, and genomics data. Accordingly, clinical and measurement data imported into I2B2 were cross-mapped to industry standard concepts for names and values including those derived from BRIDG, CDISC SDTM, DICOM Structured Reporting models and using NCI Thesaurus, SNOMED CT and LOINC controlled terminology.
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- DM (Demographics)
- DS (Disposition)
- MI (Microscopic Findings)
- PR (Procedures)
- SS (Subject Status)
- TU (Tumor/Lesion Identification)
- TR (Tumor/Lesion Results)
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| title | Data Access |
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| SAS Transport Files (XPT) | | | Image Analysis (CSV) | |
Please contact help@cancerimagingarchive.net with any questions regarding usage. Collections Used in this Third Party Analysis
Below is a list of the Collections used in these analyses: |
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| title | Detailed Description |
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| Detailed DescriptionTCIA breast cancer collections used: |
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TCIA brain cancer collection used: |
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| title | Citations & Data Usage Policy |
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| Citations & Data Usage Policy | Public collection license |
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| Info |
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| Hickman H., Ver Hoef W., Hastak S., Neville J., Clunie D., Wagner U., Helton E. (2019). SDTM datasets of clinical data and measurements for selected cancer collections to TCIA [Dataset]. The Cancer Imaging Archive. doi: 10.7937/TCIA.2019.zfv154m9 |
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| title | Publication Citation |
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| Clunie, D., Hickman, H., Ver Hoef, W., Hastak, S., Evans, J., Neville, J., & Wagner, U. (2020). Observations from the Data Integration and Imaging Informatics (DI-Cubed) Project. MDPI AG. https://doi.org/10.20944/preprints202008.0474.v1 |
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| Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F. (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository. Journal of Digital Imaging, 26(6), 1045–1057. https://doi.org/10.1007/s10278-013-9622-7 |
Other Publications Using This DataTCIA maintains a list of publications that leverage TCIA data. If you have a manuscript you'd like to add please contact TCIA's Helpdesk. |
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| Version 1 (Current): 2019/06/21
| Data Type | Download all or Query/Filter |
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