The Cancer Imaging Archive (TCIA) Public Access

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Summary


Excerpt

This data is from a multi-site, multi-parametric quantitative MRI study of adult (18+ years old) females diagnosed with invasive breast cancer.  Subjects all had a lesion size >1cm in longest dimension and were undergoing neoadjuvant therapy. Participants were scanned prior to any therapy and then 2-3 times after the initiation of neoadjuvant therapy, depending upon their treatment regimen. All data sets were acquired with a research-only protocol, including: DWI (SE EPI), OGSE, qMT, B0 map, multi-flip T1 map, Bloch-Siegert B1 map, DCE, and a T1-weighted anatomical image.

This dataset is an extension of the original QIN-BREAST  collection, with updated scan protocols and data collected at both Vanderbilt University Medical Center and the University of Chicago to demonstrate reproducible results at multiple sites (both using Philips 3T MR scanners).  


Acknowledgements

We would like to acknowledge the individuals and institutions that have provided data for this collection:

  • Thomas E. Yankeelov,  Ph.D. (University of Texas at Austin),
  • Gregory S. Karczmar Ph.D.(University of Chicago),
  • Richard G. Abramson, M.D. and Lori Arlinghaus, Ph.D. (Vanderbilt University Medical Center)

Localtab Group


Localtab
activetrue
titleData Access

Data Access

This is a limited access data set. To request access, please contact help@cancerimagingarchive.net. Once access is granted, click the Download button to save a ".tcia" manifest file to your computer, which you must open with the NBIA Data Retriever. Click the Search button to open our Data Portal, where you can browse the data collection and/or download a subset of its contents.

Data TypeDownload all or Query/Filter
Images (DICOM, 3.9 GB)

 

Clinical Data (XLSX)

Acquisition Scan Parameters (XLSX) 

Click the Versions tab for more info about data releases.


Localtab
titleDetailed Description

Detailed Description

Image Statistics


Modalities

MR

Number of Patients

13

Number of Studies

34

Number of Series

235

Number of Images

31,790

Images Size (GB)3.9

Not all participants completed all rounds of imaging. Clinical spreadsheets are available. Acquisition scan parameter tables are available.



Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy

This is a limited access data set. Upon receiving access you may only use it for the purposes outlined in your request to the data provider. You are not allowed to redistribute the data or use it for other purposes.  See TCIA's Data Usage Policies and Restrictions for additional details. Questions may be directed to help@cancerimagingarchive.net.


Please be sure to acknowledge both this data set and TCIA in publications by including the following citations in your work:

Info
titleData Citation

Yankeelov TE, Karczmar GS, Abramson RG. (2019) Data from QIN-BREAST-02[Dataset]. The Cancer Imaging Archive. doi: 10.7937/TCIA.2019.4cfm06rr


Info
titleArticle citation

(coming soon)


Info
titleTCIA Citation

Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI: 10.1007/s10278-013-9622-7

Other Publications Using This Data

TCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk.


Localtab
titleVersions

Update 2020/02/12: Clinical data table has one code revision, text/numeric values have not changed.

Version 1 (Current): Updated 2019/07/10

Data TypeDownload all or Query/Filter
Images (DICOM, 4 GB)

(Requires NBIA Data Retriever.)

Clinical Data (XLSX)

Acquisition Scan Parameters (XLSX) 

Added new subjects, 10/22/2019 corrected error in clinicaldata spreadsheet.