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locationhttps://doi.org/10.7937/K9/TCIA.2016.6046GUDv

Summary

This collection of prostate Magnetic Resonance Images (MRIs) was obtained with an endorectal and phased array surface coil at 3T (Philips Achieva). Each patient had biopsy confirmation of cancer and underwent a robotic-assisted radical prostatectomy. A mold was generated from each MRI, and the prostatectomy specimen was first placed in the mold, then cut in the same plane as the MRI. The data was generated at the National Cancer Institute, Bethesda, Maryland, USA between 2008-2010. For scientific or other inquiries relating to this data set, please contact

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TCIA's Helpdesk.

Localtab Group



Localtab
activetrue
titleData Access

Data Access

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Data TypeDownload all or Query/FilterLicense
Images (DICOM, 3.2GB)

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Click the Versions tab for more info about data releases.


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/3277260/PROSTATE-MRI-5-18-2018-doiJNLP-dKJJAqnS.tcia?version=1&modificationDate=1534786953393&api=v2



Tcia button generator
labelSearch
urlhttps://www.cancerimagingarchive.net/nbia-search/?CollectionCriteria=PROSTATE-MRI



(Download requires the NBIA Data Retriever)

Tcia cc by 3

Histopathology Images (JPEG, 206MB)


Tcia button generator
urlhttps://faspex.cancerimagingarchive.net/aspera/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6IjU1NiIsInBhc3Njb2RlIjoiNjBhNDEwNzIyZTczODkzOTE0MjEzNjUxZGI2OWExOGM0MWM5MDY1NiIsInBhY2thZ2VfaWQiOiI1NTYiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0=



Tcia button generator
labelSearch
urlhttps://pathdb.cancerimagingarchive.net/imagesearch?f[0]=collection:prostate_mri



(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) 

Tcia cc by 3


Nci_crdc additional resources




Localtab
titleDetailed Description

Detailed Description

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Radiology Statistics

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Pathology Statistics

Modalities

MR

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biopsy

Number of Participants

26

26

Number of Studies

26

26

Number of Series

182

26

Number of Images

22,036

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26

Image Size 3.2 GB206 MB

Note from the investigators: The DICOM elements for these values may no longer exist within the files themselves but: the b values are 0, 188, 375, 563, 750 for the diffusion weighted MRI of that dataset.





Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy 

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tcia-

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limited-license-policy

Info
titleData Citation

Choyke P, Turkbey B, Pinto P, Merino M, Wood B. (2016). Data From PROSTATE-MRI. The Cancer Imaging Archive. http://doi.org/10.7937/K9/TCIA.2016.6046GUDv




Info
titleTCIA Citation

Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F.

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(2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository

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. In Journal of Digital Imaging

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(Vol. 26,

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Issue 6

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, pp

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1045–1057). Springer Science and Business Media LLC. https://doi.org/10.1007/s10278-013-9622-7 PMCID: PMC3824915


Other Publications Using This Data

TCIA maintains a list of publications that leverage

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TCIA data.

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 If you have a

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manuscript you'd like to add

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please contact TCIA's Helpdesk. Below is a list of such publications using this Collection:

  • Mayer, R., Simone II, C. B., Turkbey, B., & Choyke, P. (2021). Correlation of prostate tumor eccentricity and Gleason scoring from prostatectomy and multi-parametric-magnetic resonance imaging. In Quantitative Imaging in Medicine and Surgery (Vol. 11, Issue 10, pp. 4235–4244). AME Publishing Company. https://doi.org/10.21037/qims-21-24
  • Mayer, R., Simone II, C. B., Turkbey, B., & Choyke, P. (2021). Algorithms applied to spatially registered multi-parametric MRI for prostate tumor volume measurement. In Quantitative Imaging in Medicine and Surgery (Vol. 11, Issue 1, pp. 119–132). AME Publishing Company. https://doi.org/10.21037/qims-20-137a
  • Mayer, R., Simone, C. B., II, Skinner, W., Turkbey, B., & Choykey, P. (2018). Pilot study for supervised target detection applied to spatially registered multiparametric MRI in order to non-invasively score prostate cancer. In Computers in Biology and Medicine (Vol. 94, pp. 65–73). Elsevier BV. https://doi.org/10.1016/j.compbiomed.2018.01.003
  • Ciga, O., Xu, T., & Martel, A. L. (2022). Self supervised contrastive learning for digital histopathology. Machine Learning with Applications, 7. doi:10.1016/j.mlwa.2021.100198
  • Du, R., & Vardhanabhuti, V. (2020, 06-08 July 2020). 3D-RADNet: Extracting labels from DICOM metadata for training general medical domain deep 3D convolution neural networks. Paper presented at the Third Conference on Medical Imaging with Deep Learning (MIDL 2020), Montréal, QC, Canada.
  • Elkhader, J. A. (2022). An Integrative Approach to Drug Development Using Machine Learning. (Ph. D. Dissertation). Weill Medical College of Cornell University ProQuest Dissertations Publishing, Available from TCIA 10.7937/k9tcia.2017.murs5cl ; 10.7937/K9/TCIA.2016.6046GUDV database. (29390845)
  • Namakshenas, P., & Mojra, A. (2021). Optimization of polyethylene glycol-based hydrogel rectal spacer for focal laser ablation of prostate peripheral zone tumor. Physica Medica, 89, 104-113. doi:10.1016/j.ejmp.2021.07.034




Localtab
titleVersions

Version 1 (Current): Updated 2011/06/30


Data TypeDownload all or Query/Filter
Images (DICOM, 3.2GB)

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Image Removed   Image Removed

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Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/3277260/PROSTATE-MRI-5-18-2018-doiJNLP-dKJJAqnS.tcia?version=1&modificationDate=1534786953393&api=v2



Tcia button generator
labelSearch
urlhttps://www.cancerimagingarchive.net/nbia-search/?CollectionCriteria=PROSTATE-MRI



(Download requires the NBIA Data Retriever)

Pathology Images (JPEG)

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Tcia button generator
urlhttps://faspex.cancerimagingarchive.net/aspera/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6IjU1NiIsInBhc3Njb2RlIjoiNjBhNDEwNzIyZTczODkzOTE0MjEzNjUxZGI2OWExOGM0MWM5MDY1NiIsInBhY2thZ2VfaWQiOiI1NTYiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0=



Tcia button generator
labelSearch
urlhttps://pathdb.cancerimagingarchive.net/imagesearch?f[0]=collection:prostate_mri


(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) 


Update May 2018: The download of these data is no longer Limited to users with specific permission from the PIs of the Collection.

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