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Localtab Group



Localtab
activetrue
titleData Access

Data Access

C lick the  Download button to save a ".tcia" manifest file to your computer, which you must open with the NBIA Data Retriever . Click the Search button to open our
Data
Portal, where you can browse the data collection and/or download a subset of its contents.
Data TypeDownload all or Query/Filter
Images (DICOM, 73.5GB)Image Removed  Image Removed


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/1966258/TCIA_TCGA-GBM_09-16-2015.tcia?api=v2


Tcia button generator
labelSearch
urlhttps://www.cancerimagingarchive.net/nbia-search/?CollectionCriteria=TCGA-GBM



(Download requires the NBIA Data Retriever)

Tissue Slide Images (web) Image Removed


Tcia button generator
exttrue
labelSearch
urlhttps://portal.gdc.cancer.gov/legacy-archive/search/f?filters=%7B%22op%22:%22and%22,%22content%22:%5B%7B%22op%22:%22in%22,%22content%22:%7B%22field%22:%22files.data_format%22,%22value%22:%5B%22SVS%22%5D%7D%7D,%7B%22op%22:%22in%22,%22content%22:%7B%22field%22:%22cases.project.program.name%22,%22value%22:%5B%22TCGA%22%5D%7D%7D,%7B%22op%22:%22in%22,%22content%22:%7B%22field%22:%22cases.project.project_id%22,%22value%22:%5B%22TCGA-GBM%22%5D%7D%7D%5D%7D


Clinical Data (TXT)Image Removed


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/1966258/gdc_download_clinical_gbm.tar.gz?api=v2


Biomedical Data (TXT)


Image Removed
Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/1966258/gdc_download_biomedical_gbm.tar.gz?api=v2


Genomics (web) Image Removed

Tcia button generator
exttrue
labelSearch
urlhttps://portal.gdc.cancer.gov/projects/TCGA-GBM



Click the Versions tab for more info about data releases.

Third Party Analyses of this Dataset

TCIA encourages the community to publish your analyses of our datasets. Below is a list of such third party analyses published using this Collection:




Localtab
titleDetailed Description

Detailed Description


Image Statistics

Radiology

Modalities

CT,MR,DX

Number of Participants

262

Number of Studies

575

Number of Series

5,412

Number of Images

481,158

Images Size (GB)73.5


GDC Data Portal - Clinical and Genomic Data

The GDC Data Portal has extensive clinical and genomic data, which can be matched to the patient identifiers of the images here in TCIA. Below is a snapshot of clinical data extracted on 1/5/2016:

Explanations of the clinical data can be found on the Biospecimen Core Resource Clinical Data Forms linked below:

A Note about TCIA and TCGA Subject Identifiers and Dates

Subject Identifiers: a subject with radiology images stored in TCIA is identified with a Patient ID that is identical to the Patient ID of the same subject with demographic, clinical, pathological, and/or genomic data stored in TCGA. For each TCGA case, the baseline TCGA imaging studies found on TCIA are pre-surgical. 

Dates: TCIA and TCGA handle dates differently, and there are no immediate plans to reconcile:

  • TCIA Dates: dates (be they birth dates, imaging study dates, etc.) in the Digital Imaging and Communications in Medicine (DICOM) headers of TCIA radiology images have been offset by a random number of days. The offset is a number of days between 3 and 10 years prior to the real date that is consistent for each TCIA image-submitting site and collection, but that varies among sites and among collections from the same site. Thus, the number of days between a subject’s longitudinal imaging studies are accurately preserved when more than one study has been archived while still meeting HIPAA requirements.
  • TCGA Dates: the patient demographic and clinical event dates are all the number of days from the index date, which is the actual date of pathologic diagnosis. So all the dates in the data are relative negative or positive integers, except for the “days_to_pathologic_diagnosis” value, which is 0 – the index date. The years of birth and diagnosis are maintained in the distributed clinical data file. The NCI retains a copy of the data with complete dates, but those data are not made available.With regard to other TCGA dates, if a date comes from a HIPAA “covered entity’s” medical record, it is turned into the relative day count from the index date. Dates like the date TCGA received the specimen or when the TCGA case report form was filled out are not such covered dates, and they will appear as real dates (month, day, and year).




Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy 

Public collection license

Info
titleTCGA Attribution
"The results <published or shown> here are in whole or part based upon data generated by the TCGA Research Network: http://cancergenome.nih.gov/."


Info
titleData Citation

Scarpace, L., Mikkelsen, T., Cha, S., Rao, S., Tekchandani, S., Gutman, D., Saltz JH, J. H., Erickson BJ, B. J., Pedano, N., Flanders AE, A. E., Barnholtz-Sloan, J., Ostrom, Q., Barboriak, D., Pierce LJ& Pierce, L. J. (2016). Radiology Data from The Cancer Genome Atlas Glioblastoma Multiforme [TCGA-GBM] collection [Data set]. The Cancer Imaging Archive; 2016. DOI: https://doi.org/10.7937/K9/TCIA.2016.RNYFUYE9


Info
titleTCIA Citation

Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F.  (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, . Journal of Digital Imaging, Volume 26, Number (6, December, 2013, pp 1045-1057. DOI: ), 1045–1057. https://doi.org/10.1007/s10278-013-9622-7


 Other Publications Using This Data

See the TCIA Publications page for other work leveraging TCIA collections. If you have a manuscript you'd like to add please contact the TCIA Helpdesk.





Localtab
titleVersions

Version 4 (Current): Updated 2020/05/29

Image Removed  Image Removed Image Removed Image RemovedImage Removed Image Removed
Data TypeDownload all or Query/Filter
Images (DICOM, 73.5GB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/1966258/TCIA_TCGA-GBM_09-16-2015.tcia?api=v2


Tcia button generator
labelSearch
urlhttps://www.cancerimagingarchive.net/nbia-search/?CollectionCriteria=TCGA-GBM



(Download requires the NBIA Data Retriever)

Tissue Slide Images (web)


Tcia button generator
exttrue
labelSearch
urlhttps://portal.gdc.cancer.gov/legacy-archive/search/f?filters=%7B%22op%22:%22and%22,%22content%22:%5B%7B%22op%22:%22in%22,%22content%22:%7B%22field%22:%22files.data_format%22,%22value%22:%5B%22SVS%22%5D%7D%7D,%7B%22op%22:%22in%22,%22content%22:%7B%22field%22:%22cases.project.program.name%22,%22value%22:%5B%22TCGA%22%5D%7D%7D,%7B%22op%22:%22in%22,%22content%22:%7B%22field%22:%22cases.project.project_id%22,%22value%22:%5B%22TCGA-GBM%22%5D%7D%7D%5D%7D


Clinical Data (TXT)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/1966258/gdc_download_clinical_gbm.tar.gz?api=v2


Biomedical Data (TXT)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/1966258/gdc_download_biomedical_gbm.tar.gz?api=v2


Genomics (web)

Tcia button generator
exttrue
labelSearch
urlhttps://portal.gdc.cancer.gov/projects/TCGA-GBM


Updated clinical data link with latest spreadsheets from GDC. Added new biomedical spreadsheets from GDC.

Version 3: Updated 2015/09/16


Data TypeDownload all or Query/Filter
Images (DICOM, 73.5GB)

(Download requires the NBIA Data Retriever .)

Clinical Data (TXT)
Genomics (web)


 1 new subject added.

Version 2: Updated 2016/01/05


Data TypeDownload all or Query/Filter
Images (DICOM, 72.8GB)

(Download requires the NBIA Data Retriever .)

Clinical Data (TXT)
Genomics (web)


Extracted latest release of clinical data (TXT) from the GDC Data Portal.

Version 1: Updated 2014/12/30


Data TypeDownload all or Query/Filter
Images (DICOM, 72.8GB)

Clinical Data (TXT)
Genomics (web)


On 03-01-2013 available subjects in TCIA were reduced from 279 to 240 because some cases were subsequently excluded from the GDC Data Portal.




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