Page History

Detailed Description

Supporting Documentation

The data set is fully described in the following publications:

1. Singanamalli, A. , Rusu, M. , Sparks, R. E., Shih, N. N., Ziober, A. , Wang, L. , Tomaszewski, J. , Rosen, M. , Feldman, M. and Madabhushi, A. (2016), Identifying in vivo DCE MRI markers associated with microvessel architecture and gleason grades of prostate cancer. J. Magn. Reson. Imaging, 43: 149-158. doi: https://doi.org/10.1002/jmri.24975

    

   (PMID:26110513).

2. Toth, R, Feldman, M, Yu, D, Tomaszewski, J, Madabhushi, A, “ Histostitcher™“Histostitcher™: An Informatics Software Platform for Reconstructing Whole-Mount Prostate Histology using the Extensible Imaging Platform (XIP™) Framework,” Journal of Pathology Informatics, vol. 5, pg. 8, 2014 (PMID: 24843820, PMCID: PMC4023035). https://doi.org/10.4103/2153-3539.129441
3. Xiao, G, Bloch, N, Chappelow, J, Genega, E, Rofsky, N, Lenkinsky, R, Tomaszewski, J, Feldman, M, Rosen, M, Madabhushi, A, “ Determining “Determining Histology-MRI Slice Correspondences for Defining MRI-based Disease Signatures of Prostate Cancer,” Special Issue of Computerized Medical Imaging and Graphics on Whole Slide Microscopic Image Processing, vol. 35[7-8], pp. 568-78, 2011 (PMID: 21255974). https://doi.org/10.1016/j.compmedimag.2010.12.003
4. Chappelow, J, Bloch, N., Rofsky, N, Genega, E, Lenkinski, R, DeWolf, W, Madabhushi, A,   “ Elastic “Elastic Registration of Multimodal Prostate MRI and Histology via Multi-Attribute Combined Mutual Information,” Medical Physics, vol. 38[4], pp. 2005-2018, 2011 (PMID: 21626933).

Pathology and Matlab Data

1. https://

1. doi.

1. org/10.

1. 1118/

1. 1.3560879

Citations & Data Usage Policy 

 This collection is freely available to browse, download, and use for commercial, scientific and educational purposes as outlined in the Creative Commons Attribution 3.0 Unported License.  See TCIA's Data Usage Policies and Restrictions for additional details. Questions may be directed to help@cancerimagingarchive.net.

Please be sure to include the following citations in your work if you use this data set:

Other Publications Using This Data

TCIA maintains a list of publications that which leverage our data. At this time we are not aware of any publications based on this data. If you have a publication you'd like to add, please contact the TCIA's Helpdesk.

1. Brunese, L., Mercaldo, F., Reginelli, A., & Santone, A. (2020). Formal methods for prostate cancer gleason score and treatment prediction using radiomic biomarkers. Magnetic resonance imaging, 66, 165-175. doi:https://doi.org/10.1016/j.mri.2019.08.030
2. Chatzoudis, P. (2018). MRI prostate cancer radiomics: Assessment of effectiveness and perspectives. (Master of Biomedical Engineering). Delft University of Technology, Delft, Netherlands. Retrieved from http://resolver.tudelft.nl/uuid:b8459bdb-1761-4f17-8807-e3b1cf7da629 
3. Duran, A., Dussert, G., Rouviere, O., Jaouen, T., Jodoin, P. M., & Lartizien, C. (2022). ProstAttention-Net: A deep attention model for prostate cancer segmentation by aggressiveness in MRI scans. Medical image analysis, 77, 102347. doi:https://doi.org/10.1016/j.media.2021.102347 

Version

2 (Current)

: Updated 2023/04/10

Added a correspondence xlsx between MR and Pathology slides, imaging data are unchanged. 

Version 1: Updated 2016/11/30

Data Type	Download all or Query/Filter
Images (DICOM, 4.4 GB)	Tcia button generator url https://wiki.cancerimagingarchive.net/download/attachments/23691514/doiJNLP-auLIj9wT-Prostate_Fused-MRI-Pathologyv1.tcia?version=1&modificationDate=1534787026838&api=v2 Tcia button generator label Search url https://nbia.cancerimagingarchive.net/nbia-search/?CollectionCriteria=Prostate%20Fused-MRI-Pathology    (Download requires the NBIA Data Retriever Image Removed Image Removed (Requires the NBIA Data Retriever.)
Annotated Whole Slide Pathology Images & Annotations (Tiff, XML 76.8 GB)	Tcia button generator url https://faspex.cancerimagingarchive.net/aspera/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6IjUzNSIsInBhc3Njb2RlIjoiMGUwNWFjMmU0MWNkYWRmZTA1ZGYxNzZjNjRiMzM5MDc3OGNjMTI5MyIsInBhY2thZ2VfaWQiOiI1MzUiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0= Tcia button generator label Search url https://pathdb.cancerimagingarchive.net/imagesearch?f[0]=collection:prostate_fused_mri_pathology         (Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package)   Image Removed  Image Removed
Fused Rad-Path MATLAB Files	Tcia button generator url https://wiki.cancerimagingarchive.net/download/attachments/23691514/fused_prostate_matlab.zip?version=1&modificationDate=1476802701461&api=v2    Image Removed Image Removed