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As an opportunity to leverage this wealth of new biomedical knowledge, CIP used its agreements with TCGA Tissue Site Source institutions to collect clinical diagnostic images for TCIA that match genomically analyzed tissue cases in the 20-plus cancer types that TCGA has characterized.
Ongoing Research Efforts
Imaging Source Site (ISS)
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Groups are
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being populated and governed by participants from institutions
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that have provided imaging data to the archive for a given cancer type. Modeled after
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TCGA analysis groups,
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ISS groups
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are given the opportunity to publish a marker paper for a given cancer
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type per the guidelines in the table above. This opportunity will generate increased participation in building these multi-institutional data sets
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as they become an open community resource. Current ISS groups include:
Group Name | Tumor Type |
| TCGA Bladder Phenotype Research Group | Urothelial Bladder Carcinoma (BLCA) |
TCGA Collections Publication
PoliciesGuidelines
TCIA publication guidelines, derived from the policy outlined by TCGA, must be followed in addition to the TCGA Data Portal publication policy: http://cancergenome.nih.gov/abouttcga/policies/publicationguidelines.
There are no limitations on publications containing analyses using TCGA-linked imaging data sets, if the data set meets one of the following three freedom-to-publish criteria:
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The specific status of each tumor data set is available belowon the Data Usage Policies and Restrictions page. Do not hesitate to contact cancerimagingarchive@mail.nih.gov with any questions.
Tumor Type | ||
No restrictions; all data available without limitations. | Projects have not reached 100 imaging cases; please check with cancerimagingarchive@mail.nih.gov prior to any publication. | |
No restrictions; all data available without limitations. | No restrictions; image data available without limitations. | |
No restrictions; all data available without limitations. | No restrictions; image data available without limitations. | |
No restrictions; all data available without limitations. | Projects have not reached 100 imaging cases; please check with cancerimagingarchive@mail.nih.gov prior to any publication. | |
No restrictions; all data available without limitations. | Projects have not reached 100 imaging cases; please check with cancerimagingarchive@mail.nih.gov prior to any publication. | |
No restrictions; all data available without limitations. | No restrictions; image data available without limitations. | |
Publication limitations in place until 6/20/2014; please check with tcga@mail.nih.gov prior to any publication. | Projects have not reached 100 imaging cases; please check with cancerimagingarchive@mail.nih.gov prior to any publication. | |
No restrictions; all data available without limitations. | Projects have not reached 100 imaging cases; please check with cancerimagingarchive@mail.nih.gov prior to any publication. | |
Publication limitations in place until 7/31/2014; please check with tcga@mail.nih.gov prior to any publication. | Projects have not reached 100 imaging cases; please check with cancerimagingarchive@mail.nih.gov prior to any publication. | |
No restrictions; all data available without limitations. | Projects have not reached 100 imaging cases; please check with cancerimagingarchive@mail.nih.gov prior to any publication. | |
No restrictions; all data available without limitations. | Projects have not reached 100 imaging cases; please check with cancerimagingarchive@mail.nih.gov prior to any publication. | |
No restrictions; all data available without limitations. | Projects have not reached 100 imaging cases; please check with cancerimagingarchive@mail.nih.gov prior to any publication. | |
No restrictions; all data available without limitations. | Projects have not reached 100 imaging cases; please check with cancerimagingarchive@mail.nih.gov prior to any publication. |
Ongoing Research Efforts
CIP continues to encourage ad hoc multi-institutional research teams to analyze these data sets as they are collected. Efforts have begun or are being initiated for the following TCGA tissue types. Points of contact for collaborating with the existing research groups can be found on their respective pages.
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Group Name
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Tumor Type
contact help@cancerimagingarchive.net with any questions.
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TCGA Breast Phenotype Research Group
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Breast invasive carcinoma (BRCA)
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TCGA Glioma Phenotype Research Group
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Glioblastoma (GBM), lower grade glioma (LGG)
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TCGA Head-Neck Phenotype Research Group
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Head-neck squamous cell carcinoma (HNSC)
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TCGA Renal Phenotype Research Group
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Kidney renal clear cell carcinoma (KIRC)
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TCGA Ovarian Phenotype Research Group
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References
The following links contain publications from the main TCGA project as well as their posted publication guidelines:
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- TCIA Workshop at 2014 TCGA Symposium - Presented at TCGA Scientific Symposium, May 12, 2014 in Washington, DC.
- Imaging and Genomics: Is There a Synergy? - Published in Radiology 2012 ,264:329–31.
- A Scalable Methodology for Correlating Clinical Imaging Features with TCGA Data - Presented at TCGA Network Symposium, November 17–18, 2011 Washington, DC.
- The Cancer Imaging Archive: a Repository of Advanced Imaging Information Correlated with TCGA Samples - Presented at TCGA Network Symposium, November 17–18, 2011 Washington, DC.