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  • Imaging Features, and Correlations with Genomic and Clinical Data from the TCGA Ovarian Radiology Research Group (TCGA-OV-Radiogenomics)

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Authors

Alberto Vargas, Erich Huang, Yulia Lakhman, Joe Ippolito, Priya Bhosale, Vincent Mellnick, Atul Shinagare, Maria Anello, Justin Kirby, Brenda Fevrier-Sullivan, John Freymann, Carl Jaffe, Evis Sala

Citation

Smith K, Clark K, Bennett W, Nolan T, Kirby J, Wolfsberger M, Moulton J, Vendt B, Freymann J. Radiology Data from The Cancer Genome Atlas Ovarian Cancer [TCGA-OV] collection. (2016). doi:10.7937/K9/TCIA.2016.NDO1MDFQ

Description

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This study was a multi-reader, multi-institutional, IRB-approved retrospective analysis of 93 HGSOC patients with abdominal and pelvic CT scans prior to primary debulking that were available through The Cancer Imaging Archive (TCIA). Eight radiologists from The Cancer Genome Atlas-Ovarian Cancer (TCGA-OV) Imaging Research Group developed and subsequently independently recorded the following CT features in each patient: primary ovarian mass(es) characteristics (if present), presence and distribution of peritoneal tumor spread, lymphadenopathy, and distant metastases. Inter-observer agreement for the CT features was assessed, as were associations of these features with time-to-disease progression (TTP) and CLOVAR subtypes and abilities of combinations of these features to predict TTP and CLOVAR subtypes. Results of analyzing this data are published in a manuscript

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titled Radiogenomics of High-Grade Serous Ovarian Cancer: Multi- Reader Multi-Institutional Study from The Cancer Genome Atlas-Ovarian Cancer (TCGA-OV) Imaging Research Group.


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activetrue
titleData Access

Data Access

Click the Download  button to save a ".tcia" manifest file to your computer, which you must open with the  NBIA Data Retriever

Data TypeDownload all or Query/Filter
Images (DICOM)

Full Radiologist Assessments of Image Features  (CSV)

Consensus Radiologist Assessments of Image Features  (CSV)

Clinical data (CSV)
Genomic sub-type data (CSV)

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titleDetailed Description

Detailed Description



Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy 

Public collection license
Info
titleData Citation

Vargas, Alberto; Huang, Erich; Lakhman, Yulia; Ippolito, Joe; Bhosale, Priya; Mellnick, Vincent; Shinagare, Atul; Anello, Maria; Kirby, Justin; Fevrier-Sullivan, Brenda; Freymann, John; Jaffe, Carl; Sala, Evis,. (2016). Imaging Features, and Correlations with Genomic and Clinical Data from the TCGA Ovarian Radiology Research Group. The Cancer Imaging Archive. http://doi.org/10.7937/K9/TCIA.2016.PSJOXM47


Info
titlePublication Citation
Vargas HA, Huang EP, Lakhman Y, Ippolito JE, Bhosale P, Mellnick V, Shinagare AB, Anello M, Kirby J, Fevrier-Sullivan B, Freymann J, Jaffe CC, Sala E. Radiogenomics of High-Grade Serous Ovarian Cancer: Multireader Multi-Institutional Study from the Cancer Genome Atlas Ovarian Cancer Imaging Research Group. Radiology.  2017 Jun 22:161870. doi: 10.1148/radiol.2017161870. (link)


Info
titleTCIA Citation

Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. (paper)

Other Publications Using This Data

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Localtab
titleVersions

Version 1 (Current): 2016/08/02

Data TypeDownload all or Query/Filter
Images (DICOM)

Full Radiologist Assessments of Image Features  (CSV)

Consensus Radiologist Assessments of Image Features  (CSV)

Clinical data (CSV)
Genomic sub-type data (CSV)

Special instructions:

A related paper is in the final stages of preparation for submission. Please restrict page access to CIP/UAMS for now and I will make it public when the paper is published.

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TCGA Ovarian Research Group Data  (no URL link yet?)

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