Summary
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Prostate cancer T1- and T2-weighted magnetic resonance images (MRIs) were acquired on a 1.5 T Philips Achieva by combined surface and endorectal coil |
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, including dynamic contrast-enhanced images obtained prior to, during and after I.V. administration of 0.1 mmol/kg |
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body weight of Gadolinium-DTPA (pentetic acid). For geenral inquiries please contact TCIA helpdesk help@cancerimagingarchive.net an for scientific inquiries relating to the data-set, please contact |
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Dr. Nicolas Bloch (nicolas.bloch@bmc.org). |
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| active | true |
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| title | Data Access |
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You can view and download these images on The Cancer Imaging Archive by logging in to TCIA and selecting the Prostate-Diagnosis collection. |
AccessClick the Download button to save a ".tcia" manifest file to your computer, which you must open with the NBIA Data Retriever. Click the Search button to open our Data Portal, where you can browse the data collection and/or download a subset of its contents.
| Data Type | Download all or Query/Filter |
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| Images (DICOM, 5.6GB) | | | Clinical Metadata (XLS) | | | Multi-component NRRD Segmentations (zip) | | | Seminal vesicles (SV) and neurovascular bundle (NVB) Segmentations (zip) | |
Click the Versions tab for more info about data releases. Third Party Analyses of this DatasetTCIA encourages the community to publish your analyses of our datasets. Below is a list of such third party analyses published using this Collection: |
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| title | Detailed Description |
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| Detailed Description
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Collection Statistics
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Modalities | MR (T1, T2, and DCE sequences) | Number of |
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If you are unsure how to download this Collection please view our quick guide on Searching by Collection or refer to our The Cancer Imaging Archive User's Guide for more detailed instructions on using the site.
Shared Lists
- Prostate-Diagnosis Collection: 2012-03-15 Update - Use this Shared List to obtain only the newer cases added on 2012-03-15.
- Prostate-Diagnosis Collection: 2012-05-22 Update - Use this Shared List to obtain only the newer cases added on 2012-05-22.
Note: See Section 3.7 of TCIA User Guide for help with Shared Lists.
Supporting Documentation and metadata
Corresponding clinical metadata (XLS format) and 3D segmentation files (NRRD format) are offered as a supplement to this image collection. - Prostate-Diagnosis metadata (updated 2012-05-07) - The XLS file contains pathology biopsy and excised gland tissue reports and the MRI radiology report for most
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- subjects.
- NRRD 3D segmentations (2 separate sets of segmentations available)
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Image Removed
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Prostate and adjacent anatomy as seen in T2w MRI. Cutoff shows the MRI intensities along with the different regions: purple-prostate capsule, light green - peripheral zone, yellow - urethra, pink - ejaculatory ducts, gray- seminal vesicles, and dark green neurovascular bundles. Also, the dominant nodule (cancer) was annotated and shown in red. Figure by Drs Mirabela Rusu and Anant Madabhushi, Laboratory for Computational Imaging and Bioinformatics, Rutgers State University of New Jersey |
- The software used to generate the NRRD files on the MR T2W_TSE_AX image sequences
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- was 3DSlicer. The 3DSlicer NRRD files allow visualization and downstream analysis of the following prostate components: prostate gland boundary; internal capsule; central gland, peripheral zone; seminal vesicles; urethra; cancer – dominant nodule; neurovascular bundle; penile bulb; ejaculatory duct; veru-montanum; and rectum. Presently, there are available mark-ups of 5 cases (case extension #'s 0006, 0014, 0019, 0021, 0048)
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- . These markups are made public courtesy (and copyrighted by) Dr. Nicolas Bloch as portions of his forthcoming online prostate cancer image atlas.
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| title | Citations & Data Usage Policy |
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| Citations & Data Usage Policy | Public collection license |
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| Info |
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| Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. (paper) |
Other Publications Using This DataTCIA maintains a list of publications which leverage our data. At this time we are not aware of any publications based on this data. If you have a publication you'd like to add please contact the TCIA Helpdesk. |
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| Version 1 (Current): Updated 2013/01/30
| Data Type | Download all or Query/Filter |
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| Images (DICOM, 5.6GB) | | | Clinical Metadata (XLS) | | | Multi-component NRRD Segmentations (zip) | | | NCI ISBI Challenge - Segmentations of central gland and the peripheral zone (zip) | | | Seminal vesicles (SV) and neurovascular bundle (NVB) Segmentations (zip) | |
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