The Cancer Imaging Archive (TCIA) Public Access

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Summary

Excerpt

Prostate cancer T1- and T2-weighted magnetic resonance images (MRIs) were acquired on a 1.5 T Philips Achieva by combined surface and endorectal coil, including dynamic contrast-enhanced images obtained prior to, during and after I.V. administration of 0.1 mmol/kg body weight of Gadolinium-DTPA (pentetic acid). For geenral inquiries please contact TCIA helpdesk help@cancerimagingarchive.net an for scientific inquiries relating to the data-set, please contact Drs. C. Carl Jaffe (carl.jaffe@bmc.org) or Dr. Nicolas Bloch (nicolas.bloch@bmc.org).

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Imaging
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Data Access

Data Access

Click the Download button to save a ".tcia" manifest file to your computer, which you must open with the NBIA Data Retriever. Click the Search button to open our Data Portal, where you can browse the data collection and/or download a subset of its contents.


Data TypeDownload all or Query/Filter
Images (DICOM, 5.6GB)

Image Added  Image Added

(Download requires the NBIA Data Retriever .)

Clinical Metadata (XLS)
Image Added
Multi-component NRRD Segmentations (zip)
Image Added
Seminal vesicles (SV) and neurovascular bundle (NVB) Segmentations (zip)
Image Added


Click the Versions tab for more info about data releases.

Third Party Analyses of this Dataset

TCIA encourages the community to publish your analyses of our datasets. Below is a list of such third party analyses published using this Collection:




Updated 2013/01/30
Localtab
titleDetailed Description

Detailed Description


Collection Statistics

Info

You can view and download these images on The Cancer Imaging Archive (TCIA) by clicking Search TCIA and selecting the Prostate-Diagnosis collection.

Collection Statistics


Modalities

MR (T1, T2, and DCE sequences)

Number of

Patients

Participants

92

Number of Studies

92

Number of Series

368

Number of Images

32,537

Images
Image Size (GB)5.6

If you are unsure how to download this collection, please view Searching by Collection or refer to TCIA's User's Guide for more detailed instructions on using the site.

Shared Lists

Prostate-Diagnosis Collection: 2012-03-15 Update- Use this shared list to obtain only the newer cases added on 2012-03-15.
  • Prostate-Diagnosis Collection: 2012-05-22 Update- Use this shared list to obtain only the newer cases added on 2012-05-22.



    • Note: See Section 3.7 of TCIA User Guide for help with shared lists.

    Supporting Documentation and

    Metadata

    Corresponding clinical metadata (XLS format) and 3D segmentation files (NRRD format) are offered as a supplement to this image collection.

    • Prostate-Diagnosis metadata (updated 2012-05-07) - The XLS file contains pathology biopsy and excised gland tissue reports and the MRI radiology report for most
    of the collection's 53 prostate cancer cases.
    • Prostate-Diagnosis metadata (updated 2012-05-07)subjects.
    • NRRD 3D segmentations (2 separate sets of segmentations available)
      • NRRD segmentations (updated 2012-05-07)- The software used to generate the NRRD files on the MR T2W_TSE_AX image sequences was was 3DSlicer. The 3DSlicer NRRD files allow visualization and downstream analysis of the following prostate components: prostate gland boundary; internal capsule; central gland, peripheral zone; seminal vesicles; urethra; cancer – dominant nodule; neurovascular bundle; penile bulb; ejaculatory duct; veru-montanum; and rectum. Presently, there are available mark-ups of 5 cases (case extension #'s 0006, 0014, 0019, 0021, 0048). These markups are made public courtesy (and copyrighted by) Dr. Nicolas Bloch as portions of his forthcoming online prostate cancer image atlas.
      • NCI_ISBI_Challenge-ProstateDx_Training_Segmentations.zip- This file contains segmentations for 30 Prostate-Diagnosis subjects in NRRD format which mark the boundaries of the central gland and peripheral zone. This data was provided as part of the the NCI-ISBI 2013 Challenge - Automated Segmentation of Prostate Structures.
      • ProstateDx_1.5T_Training_Segmentations.zip - Segmentations of the neurovascular bundle and seminal vessicles are available as MHA files. These were provided as part of a planned follow up competition that did not materialize.
      • Note: see our tutorial on Using 3D Slicer with the Prostate-Diagnosis data if you are not familiar with using this kind of data.




    Localtab
    titleCitations & Data Usage Policy

    Citations & Data Usage Policy 

    Public collection license

    Info
    titleData Citation

    Bloch, B. Nicolas, Jain, Ashali, & Jaffe, C. Carl. (2015). Data From PROSTATE-DIAGNOSIS. The Cancer Imaging Archive. http://doi.org/10.7937/K9/TCIA.2015.FOQEUJVT




    Info
    titleTCIA Citation

    Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. (paper)


    Other Publications Using This Data

    TCIA maintains a list of publications which leverage our data. At this time we are not aware of any publications based on this data. If you have a publication you'd like to add please contact the TCIA Helpdesk.




    Prostate and adjacent anatomy as seen in T2w MRI. Cutoff shows the MRI intensities along with the different regions: purple-prostate capsule, light green - peripheral zone, yellow - urethra, pink - ejaculatory ducts, gray- seminal vesicles, and dark green neurovascular bundles. Also, the dominant nodule (cancer) was annotated and shown in red.

    Figure by Dr. Bloch, Boston Medical Center and Drs. Mirabela Rusu and Anant Madabhushi, Center for Computational Imaging and Personalized Diagnostics, Case Western Reserve University
    Localtab
    titleVersions

    Version 1 (Current): Updated 2013/01/30


    Data TypeDownload all or Query/Filter
    Images (DICOM, 5.6GB)

    Image Added  Image Added

    (Download requires the NBIA Data Retriever .)

    Clinical Metadata (XLS)
    Image Added
    Multi-component NRRD Segmentations (zip)
    Image Added
    NCI ISBI Challenge - Segmentations of central gland and the peripheral zone (zip)
    Image Added
    Seminal vesicles (SV) and neurovascular bundle (NVB) Segmentations (zip)
    Image Added
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    Image Removed

    Panel