Description
The Data Integration & Imaging Informatics (DI-Cubed) project explored the issue of lack of standardized data capture at the point of data creation, as reflected in the non-image data accompanying various TCIA breast cancer collections. The work addressed the desire for semantic interoperability between various NCI initiatives by aligning on common clinical metadata elements and supporting use cases that connect clinical, imaging, and genomics data. Accordingly, clinical and measurement data was imported into I2B2 and cross-mapped to industry standard concepts for names and values including those derived from BRIDG, CDISC SDTM, DICOM Structured Reporting models and using NCI Thesaurus, SNOMED CT and LOINC controlled terminology.
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| title | Data Access |
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| Data AccessPlease see the Detailed Description tab for related imaging Search & Download manifests.
Please contact help@cancerimagingarchive.net with any questions regarding usage. Collections Used in this Third Party Analysis
Below is a list of the Collections used in these analyses: |
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| title | Detailed Description |
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| Detailed DescriptionTCIA imaging source files for these SR. You can explore further with the "3rd-Party Analysis Results" radio button options at the lower left of the Search screen.
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TCGA-BRCA | | ISPY1 | | BREAST-DIAGNOSIS | | Breast-MRI-NACT-PILOT | |
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| title | Citations & Data Usage Policy |
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| Citations & Data Usage Policy | Public collection license |
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| Info |
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| Clunie D., Hickman H., Ver Hoef W., Hastak S., Wagner U., Helton E. (2019). DICOM SR of clinical data and measurement for breast cancer collections to TCIA [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.2019.wgllssg1 |
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| Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI; https://doi.org/10.1007/s10278-013-9622-7 |
In addition to the dataset citation above, please be sure to cite the following if you utilize these data in your research:
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| title | Publication Citation |
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| coming soon |
Other Publications Using This DataTCIA maintains a list of publications that leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk. |
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| Version 1 (Current): 2020/05/26
| Data Type | Download all or Query/Filter |
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Combined SR across 4 collections (DICOM, 1292 files, 10.0 Mb) (note, no pixel data in SR) |  
Click the Download button to save a ".tcia" manifest file to your computer, which you must open with the NBIA Data Retriever | SR for TCGA-BRCA - 164 files 1.2Mb | | SR for ISPY-1 - 845 files , 6.6Mb | | SR for BREAST-DIAGNOSIS - 94 files, 750kB | | | SR for Breast-MRI-NACT-PILOT - 189 files, 1.4Mb | |
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