Page History

Data Access

Click the Versions tab for more info about data releases.

Additional Resources

• The Helix2Fan: Helical to fan-beam CT geometry rebinning and differentiable reconstruction of DICOM-CT-PD projections repository on Github provides code to load raw helical DICOM-CT-PD CT projections and rebin them to flat detector fan-beam geometry.
  

Detailed Description

For each patient CT scan, three types of data are provided: DICOM-CT-PD projection data, DICOM image data, and Excel clinical data reports. CT projection data are provided for both full and simulated lower dose levels and CT image data reconstructed using the commercial CT system are provided for the full dose projection data. For patients scanned on the SOMATOM Definition Flash CT scanner from Siemens Healthcare, CT image data reconstructed using the commercial CT system are also provided for the lower dose projection data. All CT images were reconstructed using a filtered back projection method. Several instructional documents are provided to help users extract needed information from the DICOM-CT-PD files, including a dictionary file for the DICOM-CT-PD format, a DICOM-CT-PD reader, and a user manual.

This collection comprises 99 head scans (labeled N for neuro), 100 chest scans (labeled C for chest), and 100 abdomen scans (labeled L for liver). Fifty cases for each scan type are from a SOMATOM Definition Flash CT scanner (Siemens Healthcare, Forchheim, Germany). Forty-nine head cases, 50 chest cases, and 50 abdomen cases are from a Lightspeed VCT CT scanner (GE Healthcare, Waukesha, WI). Together, these data will greatly facilitate the development and validation of new CT reconstruction and/or denoising algorithms, including those associated with machine learning or artificial intelligence.

Acquisition protocol

All CT scans were acquired at routine dose levels for the practice at which they were obtained using standard-clinical protocols for the anatomical region of interest. Each clinical case was processed to include a second projection dataset at a simulated lower dose level.  Head and abdomen cases are provided at 25% of the routine dose and chest cases are provided at 10% of the routine dose.

¹Additional information regarding the CT projection data format: Chen B, Duan X, Yu Z, Leng S, Yu L, McCollough CH. Technical Note: Development and validation of an open data format for CT projection data. Med Phys. 2015;42(12):6964. (doi: https://doi.org/10.1118/1.4935406.)

Citations & Data Usage Policy

Other Publications Using This Data

TCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk.

Version 6 (Current): Updated 2023/04/03

Note the following corrections were made to the clinical data:

• Lesion Z locations for all GE cases now reflect slice number

Version 5 (Current): Updated 2022/12/15

Note: The following corrections were made to the clinical data:

• Incorrect Lesion coordinates

• In some places the x/y coordinates for lesions was incorrect
• In almost all Siemens datasets, the Z axis was flipped

• Incorrect UID

• Correction has been made to case L210 UID

Version 4 (Current): Updated 2022/03/31

Update on the GE data

The following corrections/changes have been made to the GE projection data:

• The value in DICOM tag (0028,1052) RescaleIntercept has been re-calculated and updated.
• DICOM tag (7033,1065) PhotonStatistics, which describes the incident x-ray beam profile after passing through the bowtie filter, has been added for every projection. The beam profile is characterized in terms of noise equivalent number of incident photons (i.e., noise equivalent quanta)..  
• DICOM tag (0018,1151) XRayTubeCurrent has been updated for the chest and abdomen cases, which use tube current modulation. The value reflects the tube current for each projection view. With tube current modulation on, this value will vary across different project views. Tube current modulation is off for the head exams.
• It was discovered that the projection data for chest case C197 was a duplication of case C009. Therefore, C197 has been omitted from the dataset, resulting in a total of 49 chest cases.
• The projection data for the sequential head scans are contained in one directory for each dose level for each patient. DICOM tag (0020, 0012) Acquisition Number, which is a number identifying the single continuous gathering of data over a period of time (i.e., one scan), can be used to sort the data based on each sequential acquisition within the exam. A MATLAB code that will sort the data in this manner has been provided here. The .m files must be placed in the same directory containing the projection files to correctly identify and sort them.  

The previous version of the GE data has been replaced with the new data (Version 4); click here to download a spreadsheet that maps the old UIDs to the new UIDs. You can access the updated series by downloading this manifest. Please contact the TCIA Helpdesk at help@cancerimagingarchive.net with any questions.

Version 3: Updated 2022/01/26

A fractional shift in pixel positions was identified between the full dose and low dose Siemens’ patient cases included in Version 1 and 2.  In the DICOM tag called “image position patient”, the full dose positions are written with seven digits after the decimal while the low dose positions have only two digits after the decimal and, in some cases, there is an offset close to 0.5 mm.  This occurred due to having the full dose (original) data reconstructed on the scanner at the time of the patient exam and the low dose data reconstructed at a later time (after noise was inserted in the projection data) using Siemens’ off-line reconstruction tools. Note that this shift is a consequence of a difference in the reconstruction tools used. The projection data are not affected. The shift primarily impacted those using the full dose and low dose images to train machine learning algorithms.

The Siemens image data have been reprocessed so that the pixel shift issue has been addressed. The DICOM tag “image patient position” is now identical for the full dose and low dose images. The previous version of the data has been replaced with the new data (Version 3); click here to download a spreadsheet that maps the old UIDs to the new UIDs. You can access the updated series by downloading this manifest. 

Version 2: Updated 2020/08/11

Important information about the GE patient cases.
 
An incorrect value was found in the RescaleIntercept DICOM tag (0028,1052) in the GE data. Additionally, we have been asked by users to determine and add PhotonStatistics values to DICOM tag (7033,1065). Hence, access to the GE data (149 cases) has been temporarily suspended while we address these issues.
 

• If you have already downloaded the GE data, you will want to download the updated data when it is again available.
• The GE data are readily recognized, as they have only 3 series per patient case (Siemens data have 4).
• The GE data can also be identified using the DICOM tag (0008,0070).
• If you have already started a project with the GE data, please contact the Mayo team to discuss the issues in greater detail to discern if they impact your work. Please send your inquiry to CTCIC@mayo.edu and the team will follow up with you.

Version 1: Updated 2020/04/22