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  • Dataset of Segmented Nuclei in Hematoxylin and Eosin Stained Histopathology Images

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Localtab Group



Localtab
activetrue
titleData Access

Data Access

Click the  Download button to be redirected to Box for downloads. Note that Box has a 15GB at one time max download restriction.


Data TypeDownload all or Query/Filter
Tissue Slide Images (SVS, 1,200 GB)
List of histopathology slides (TXT, 348.5 KB )
WSI quality control results (TXT, 151.4 KB)
Segmentation region checking results (TXT, 169.4 KB)


Click the Versions tab for more info about data releases.

Note:   Please contact help@cancerimagingarchive.net  with any questions regarding usage.




Localtab
titleDetailed Description

Detailed Description

Additional visual segmentation data can be found on PathDB

Manual nucleus segmentation data of 1,356 patches

These 1,356 patches are randomly extracted from all 14 cancer types mentioned above. This data contains original H&E stained histopathology image patches, and instance-level segmentation masks. Additional information is in the readme.txt file of this data. Download here




Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy 

Public collection license

Info
titleDataset Citation

Le Hou, Rajarsi Gupta, John S. Van Arnam, Yuwei Zhang, Kaustubh Sivalenka, Dimitris Samaras, Tahsin M. Kurc, Joel H. Saltz (2019). Dataset of Segmented Nuclei in Hematoxylin and Eosin Stained Histopathology Images of 10 Cancer Types [Data set] . The Cancer Imaging Archive. https://doi.org/10.7937/tcia.2019.4a4dkp9u


Info
titlePublication Citation

Hou, Le, Ayush Agarwal, Dimitris Samaras, Tahsin M. Kurc, Rajarsi R. Gupta, and Joel H. Saltz. "Robust Histopathology Image Analysis: To Label or to Synthesize?." In Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition , pp. 8533-8542. 2019. Open Access Here



Info
titleTCIA Citation

Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. (paper)

Info
titlePublication Citation

Hou, Le, Ayush Agarwal, Dimitris Samaras, Tahsin M. Kurc, Rajarsi R. Gupta, and Joel H. Saltz. "Robust Histopathology Image Analysis: To Label or to Synthesize?." In Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition , pp. 8533-8542. 2019. Open Access Here





Other Publications Using This Data

TCIA maintains a list of publications that leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk.





Localtab
titleVersions

Version 1 (Current): 2020/02/08


Data TypeDownload all or Query/Filter
Tissue Slide Images (SVS, 1,200 GB)
List of histopathology slides (TXT, 348.5 KB )
WSI quality control results (TXT, 151.4 KB)
Segmentation region checking results (TXT, 169.4 KB)





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