The Cancer Imaging Archive (TCIA) Public Access

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Summary

Excerpt

This collection is a set of head and neck cancer patients' multiple positron emission tomography/computed tomography (PET/CT) 18F-FDG scans–before and after therapy–with follow up scans where clinically indicated. The data was provided to help facilitate research activities of the National Cancer Institute's (NCI's) Quantitative Imaging Network (QIN). This collection was supported by Grants: U24 CA180918 (http://qiicr.org) and U01 CA140206.

The following schematic summarizes much of the work done within the QIICR grant to augment the PET/CT scans with segmentations and clinical data using the DICOM standard: (click to enlarge)

About the NCI QIN

The mission of the QIN is to improve the role of quantitative imaging for clinical decision making in oncology by developing and validating data acquisition, analysis methods, and tools to tailor treatment for individual patients and predict or monitor the response to drug or radiation therapy. More information is available on the Quantitative Imaging Network Collections page. Interested investigators can apply to the QIN at: Quantitative Imaging for Evaluation of Responses to Cancer Therapies (U01) PAR-11-150.


Localtab Group



Localtab
activetrue
titleData Access

Data Access

Tcia head license access

Click the  Download button to save a ".tcia" manifest file to your computer, which you must open with the NBIA Data Retriever . Click the Search button to open our Data Portal, where you can browse the data collection and/or download a subset of its contents.

Data TypeDownload all or Query/FilterLicense
Images and Segmentations (DICOM, 201.2 GB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/6885289/QIN-HEADNECK%20NBIA-manifest.tcia_20200914.tcia?api=v2



Tcia button generator
labelSearch
urlhttps://nbia.cancerimagingarchive.net/nbia-search/?MinNumberOfStudiesCriteria=1&CollectionCriteria=QIN-HEADNECK


  

(Download requires the NBIA Data Retriever)

Tcia restricted license

Clinical Data (.xlsx 68 kB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/6885289/Batch_01%20and%20Batch_02%20Clinical%20Data_aug242020.xlsx?api=v2



(See also Detailed Description tab)

Tcia cc by 3


Click the Versions tab for more info about data releases.




Localtab
titleDetailed Description

Detailed Description


Collection Statistics


Modalities

PET, CT, SR, SEG, RWV

Number of Participants

279

Number of Studies

1032

Number of Series

3837

Number of Images

701,002

Image Size (GB)201.2

Associated Clinical Metadata

  • Structured Report DICOM objects (Modality SR), are available for a subset of these subjects in the DICOM downloads and can be distinguished from image files by the series description "Clinical Data." Note, there is no image preview thumbnail for a Structured Report.




Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy 

Tcia limited license policy

Info
titleData Citation

Beichel R R, Ulrich E J, Bauer C, Wahle A, Brown B, Chang T, Plichta K A, Smith B J, Sunderland J J, Braun T, Fedorov A, Clunie D, Onken M, Magnotta VA, Menda Y, Riesmeier J, Pieper S, Kikinis R, Graham M M, Casavant T L, Sonka M, Buatti J M. (2015). Data From QIN-HEADNECK. The Cancer Imaging Archive. DOI:  10.7937/K9/TCIA.2015.K0F5CGLI


Info
titlePublication Citation

Fedorov A, Clunie D, Ulrich E, Bauer C, Wahle A, Brown B, Onken M, Riesmeier J, Pieper S, Kikinis R, Buatti J, Beichel RR. (2016) DICOM for quantitative imaging biomarker development: a standards based approach to sharing clinical data and structured PET/CT analysis results in head and neck cancer research. PeerJ 4:e2057  DOI: 10.7717/peerj.2057


Info
titleTCIA Citation

Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI: 10.1007/s10278-013-9622-7

Other Publications Using This Data

TCIA maintains a list of publications that leverage our data, including citations of this Collection. If you have a publication you'd like to add please contact the TCIA Helpdesk. Some publications that have used this dataset as a resource include

  1. Taghanaki et al. Segmentation-free direct tumor volume and metabolic activity estimation from PET scans. Comput Med Imaging Graph 2018 link to article
  2. Sinha et al. Towards automatic initialization of registration algorithms using simulated endoscopy images.  link to article
  3. Ghattas, Andrew Emile Medical Imaging Segmentation Assessment via Bayesian Approaches to Fusion, Accuracy and Variability Estimation with Application to Head and Neck Cancer 2017 Thesis link
  4. Stoll et al. Comparison of Safety Margin Generation Concepts in Image Guided Radiotherapy to Account for Daily Head and Neck Pose Variations PLoS One 2016 link to article
  5. Ahmadvand et al. Tumor Lesion Segmentation from 3D PET Using a Machine Learning Driven Active Surface 2016 MLMI Conference Proceedings link to article





Localtab
titleVersions

Version 4 (Current) : Updated 2020/09/15

Data TypeDownload all or Query/Filter
Images and Segmentations (DICOM 201.2 GB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/6885289/QIN-HEADNECK%20NBIA-manifest.tcia_20200914.tcia?api=v2



Tcia button generator
labelSearch
urlhttps://nbia.cancerimagingarchive.net/nbia-search/?MinNumberOfStudiesCriteria=1&CollectionCriteria=QIN-HEADNECK



(Download requires the NBIA Data Retriever)

Clinical Data  (.xlsx 68 kB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/6885289/Batch_01%20and%20Batch_02%20Clinical%20Data_aug242020.xlsx?api=v2



Added 123 new subjects (Patient IDs = QIN-HeadNeck-02-####).  Added missing PT or CT pre-treatment and follow up scans to 28 of the previously existing QIN-HeadNeck-01-#### subjects.  Added supporting clinical data in XLSX format for all patients.

Version 3: Updated 2019/07/24

Data TypeDownload all or Query/Filter
Images (DICOM, 103.5 GB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/6885289/TCIA_QIN-HEADNECK_2019-07-24.tcia?version=3&modificationDate=1563997513437&api=v2


  

DICOM Metadata Digest (CSV)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/6885289/QIN-HEADNECK_TCIAmanifest_metadata_Jul2019.csv?version=2&modificationDate=1563997454543&api=v2



Lifted restriction from SR object data download.

Version 2: Updated 2017/12/06

Downloads require the NBIA Data Retriever .

Data TypeDownload all or Query/Filter
Images (DICOM, 104 GB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/6885289/QIN-HEADNECK-12-06-2017-doiJNLP-Hb7bP6pf.tcia?version=1&modificationDate=1534786972624&api=v2



DICOM Metadata Digest (CSV)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/6885289/QIN-HEADNECK_MetaData.csv?version=1&modificationDate=1495728510607&api=v2



Added associated DICOM SEG, SR, and RWV objects

Version 1: Updated 2015/08/20

Data TypeDownload all or Query/Filter
Images (DICOM, 102.76 GB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/6885289/TCIA_QIN-HEADNECK_06-22-2015.tcia?version=1&modificationDate=1534787423317&api=v2



DICOM Metadata Digest (CSV)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/6885289/QIN-HEADNECK_MetaData.csv?version=1&modificationDate=1495728510607&api=v2