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| active | true |
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| title | Data Access |
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| Data Access| Data Type | Download all or Query/Filter | License |
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Images (DICOM, 139.4 GB) |
| Tcia button generator |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM-manifest_20210923.tcia?api=v2 |
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| Tcia button generator |
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| label | Search |
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| url | https://nbia.cancerimagingarchive.net/nbia-search/?MinNumberOfStudiesCriteria=1&CollectionCriteria=UPENN-GBM |
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(Download requires the NBIA Data Retriever) | | Images (NIfTI, 69 GB) |
| Tcia button generator |
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| url | https://faspex.cancerimagingarchive.net/aspera/faspex/external_deliveries/294?passcode=42e4a6b19c2e942278758df89029e0011fefb5be |
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(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) | | | Clinical Data (CSV, 51 kB) |
| Tcia button generator |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/70225642/https://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_clinical_info_v1.1.csv?api=v2https://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_clinical_info_v1.0.csv?api=v2 |
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| | | Image acquisition parameters (CSV, 195 kB) |
| Tcia button generator |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_acquisition.csv?api=v2 |
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| | | Data availability per subject (CSV, 126 kB) |
| Tcia button generator |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_data_availability.csv?api=v2 |
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| | | CaPTk radiomic features list (CSV, 6 kB) |
| Tcia button generator |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_CaPTk_radiomic_features_list.csv?api=v2 |
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| | | CaPTk radiomic feature parameter file (CSV, 4 kB) |
| Tcia button generator |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_CaPTk_fe_params.csv?api=v2 |
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| | | Radiomic Data (ZIP,15.37 MB) |
| Tcia button generator |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/70225642/radiomic_features_CaPTk.zip?api=v2 |
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Click the Versions tab for more info about data releases. Please contact help@cancerimagingarchive.net with any questions regarding usage. |
| Localtab |
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| title | Detailed Description |
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| Detailed DescriptionImage Statistics |
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Modalities | MR | Number of Patients | 630 | Number of Studies | 3,301 | Number of Series | 3,680 | Number of Images | 828,234 | | Images Size (GB) | 139.4 |
Note from the submitting group: The NIfTI images are all registered to a common atlas (SRI) using a uniform preprocessing and the segmentation are aligned with them. Therefore the NIfTI images will not align with the DICOM images, by design. If you load the NIfTI images (like T1/T2) and their related segmentation, these will line up. |
| Localtab |
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| title | Citations & Data Usage Policy |
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| Citations & Data Usage Policy| Tcia limited license policy |
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| Info |
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| Bakas, S., Sako, C., Akbari, H., Bilello, M., Sotiras, A., Shukla, G., Rudie, J. D., Flores Santamaria, N., Fathi Kazerooni, A., Pati, S., Rathore, S., Mamourian, E., Ha, S. M., Parker, W., Doshi, J., Baid, U., Bergman, M., Binder, Z. A., Verma, R., … Davatzikos, C. (2021). Multi-parametric magnetic resonance imaging (mpMRI) scans for de novo Glioblastoma (GBM) patients from the University of Pennsylvania Health System [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.709X-DN49 |
| Info |
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| title | Publication Citation |
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| Bakas, S., Sako, C., Akbari, H., Bilello, M., Sotiras, A., Shukla, G., Rudie, J. D., Flores Santamaria, N., Fathi Kazerooni, A., Pati, S., Rathore, S., Mamourian, E., Ha, S. M., Parker, W., Doshi, J., Baid, U., Bergman, M., Binder, Z. A., Verma, R., Lustig, R., Desai, A. S., Bagley, S. J., Mourelatos, Z., Morrissette, J., Watt, C. D., Brem, S., Wolf, R. L., Melhem, E. R., Nasrallah, M. P., Mohan, S., O’Rourke, D. M., Davatzikos, C. “The University of Pennsylvania glioblastoma (UPenn-GBM) cohort: advanced MRI, clinical, genomics, & radiomics”, Nature Scientific Data, [In Press], 2022 |
| Info |
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| Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F. (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository. Journal of Digital Imaging, 26(6), 1045–1057. https://doi.org/10.1007/s10278-013-9622-7 |
Other Publications Using This DataTCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk. |
| Localtab |
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| Version 1 (Current): 2022/06/21| Data Type | Download all or Query/Filter | License |
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Images (DICOM, 139.4 GB) |
| Tcia button generator |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM-manifest_20210923.tcia?api=v2 |
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| Tcia button generator |
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| label | Search |
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| url | https://nbia.cancerimagingarchive.net/nbia-search/?MinNumberOfStudiesCriteria=1&CollectionCriteria=UPENN-GBM |
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(Download requires the NBIA Data Retriever) | | Images (NIfTI, 69 GB) |
| Tcia button generator |
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| url | https://faspex.cancerimagingarchive.net/aspera/faspex/external_deliveries/294?passcode=42e4a6b19c2e942278758df89029e0011fefb5be |
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(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) | | | Clinical Data (CSV, 51 kB) |
| Tcia button generator |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/70225642/https://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_clinical_info_v1.1.csv?api=v2https://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_clinical_info_v1.0.csv?api=v2 |
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| | | Image acquisition parameters (CSV, 195 kB) |
| Tcia button generator |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_acquisition.csv?api=v2 |
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| | | Data availability per subject (CSV, 126 kB) |
| Tcia button generator |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_data_availability.csv?api=v2 |
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| | | CaPTk radiomic features list (CSV, 6 kB) |
| Tcia button generator |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_CaPTk_radiomic_features_list.csv?api=v2 |
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| | | CaPTk radiomic feature parameter file (CSV, 4 kB) |
| Tcia button generator |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_CaPTk_fe_params.csv?api=v2 |
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| | | Radiomic Data (ZIP,15.37 MB) |
| Tcia button generator |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/70225642/radiomic_features_CaPTk.zip?api=v2 |
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| | | CaPTk radiomic feature parameter (CSV, 5KB) |
| Tcia button generator |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/70225642/captk_parameter_file_ispy1.csv?api=v2 |
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