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  • Dynamic contrast-enhanced magnetic resonance images of breast cancer patients with tumor locations (Duke-Breast-Cancer-MRI)

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Breast MRI is a common image modality to assess extent of disease in breast cancer patients. Recent studies show that MRI has a potential in prognosis of patient sort and long term outcomes as well as predicting pathological and genomic features of the tumors. However, large, well annotated datasets are needed to make further progress in the field. In this dataset, we share MRI imaging and other data for 922 patients with invasive breast cancer. Their prone position axial breast MRI images were acquired by 1.5T or 3T scanners. Following MRI sequences are shared: a non-fat saturated T1-weighted sequence, a fat-saturated gradient echo T1-weighted pre-contrast sequence, and mostly three to four post-contrast sequences.

The images are associated with a variety of metadata. Specifically, we are sharing:

  1. Demographic, clinical, pathology, treatment, outcomes, and genomic data. This data has been collected from a variety of sources including clinical notes and has served as a source for multiple published papers on radiogenomics, outcomes prediction, and other.
  2. 529 imaging features which represent a variety of imaging characteristics including size, shape, texture, and enhancement of both the tumor and the surrounding tissue, which is combined of features commonly published in the literature, as well as the features developed in our lab. These features were used in our previous paper (https://doi.org/10.1016/j.eswa.2017.06.029)
  3. Annotation boxes provided by radiologists that indicate locations of the lesions in the images.

For more information see this site https://sites.duke.edu/mazurowski/resources/breast-cancer-mri-dataset/, the related publication, or contact TCIA Helpdesk at help@cancerimagingarchive.net



Localtab Group



Localtab
activetrue
titleData Access

Data Access

Click the  Download button to save to your local storage. Click the Search button to open our Data Portal, where you can browse the data collection and/or download a subset of its contents.


Data TypeDownload all or Query/Filter
Images (DICOM, 368.4 GB)

Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70226903/Duke-Breast-Cancer-MRI_v120201203.tcia?api=v2

Tcia button generator
labelSearch
urlhttps://nbia.cancerimagingarchive.net/nbia-search/?MinNumberOfStudiesCriteria=1&CollectionCriteria=Duke-Breast-Cancer-MRI

(Download requires the NBIA Data Retriever)

File Path mapping tables (XLSX, 49.6 MB)

Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70226903/Breast-Cancer-MRI-filepath_filename-mapping.xlsx?api=v2

Clinical and Other Features (XLSX, 582 kB)

Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70226903/Clinical_and_Other_Features.xlsx?api=v2

Annotation Boxes (XLSX, 49 kB)
Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70226903/Annotation_Boxes.xlsx?api=v2


Imaging features (XLSX, 6.44 MB)

Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70226903/Imaging_Features.xlsx?api=v2



Click the Versions tab for more info about data releases.




Localtab
titleDetailed Description

Detailed Description


Image Statistics


Modalities

MR

Number of Participants

922

Number of Studies

922

Number of Series

5,034

Number of Images

773,126

Images Size (GB)368.4

Users please note this caveat about DICOM tag (0020,0052) Frame Of Reference UID:  This DICOM tag was lost during deidentification and curation, and has been replaced with a Dummy value per study that may not be reliable for image alignment.




Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy


Tcia license 4 noncommercial
 

Info
titleData Citation

Saha, A., Harowicz, M. R., Grimm, L. J., Weng, J., Cain, E. H., Kim, C. E., Ghate, S. V., Walsh, R., & Mazurowski, M. A. (2021). Dynamic contrast-enhanced magnetic resonance images of breast cancer patients with tumor locations [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.e3sv-re93


Info
titleSource Publication Citation

Saha, A., Harowicz, M. R., Grimm, L. J., Kim, C. E., Ghate, S. V., Walsh, R., & Mazurowski, M. A. (2018). A machine learning approach to radiogenomics of breast cancer: a study of 922 subjects and 529 DCE-MRI features. British journal of cancer, 119(4), 508-516. DOI: https://doi.org/10.1038/s41416-018-0185-8


Info
titleTCIA Citation

Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F. (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository. Journal of Digital Imaging, 26(6), 1045–1057. https://doi.org/10.1007/s10278-013-9622-7


Other Publications Using This Data

TCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk.




Localtab
titleVersions

Version 1 (Current): Updated 2021/04/06

Data TypeDownload all or Query/Filter
Images (DICOM, 368.4 GB)

Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70226903/Duke-Breast-Cancer-MRI_v120201203.tcia?api=v2

Tcia button generator
labelSearch
urlhttps://nbia.cancerimagingarchive.net/nbia-search/?MinNumberOfStudiesCriteria=1&CollectionCriteria=Duke-Breast-Cancer-MRI

(Download requires the NBIA Data Retriever)

File Path mapping tables (XLSX, 49.6 MB)

Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/pages/viewpage.action?pageId=70226903&preview=%2F70226903%2F83592208%2FBreast-Cancer-MRI-filepath_filename-mapping.xlsx

Clinical and Other Features (XLSX, 582 kB)

Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/pages/viewpage.action?pageId=70226903&preview=%2F70226903%2F70228105%2FClinical_and_Other_Features.xlsx

Annotation Boxes (XLSX, 49 kB)
Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70226903/Annotation_Boxes.xlsx?api=v2


Imaging features (XLSX, 6.44 MB)

Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70226903/Imaging_Features.xlsx?api=v2


Added new subjects.