The Cancer Imaging Archive (TCIA) Public Access

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  • Digital pathological slides from Hungarian colorectal cancer screening (Hungarian-Colorectal-Screening)

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Comment: added documentation about source images derived from associated article

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Localtab Group


Localtab
activetrue
titleData Access

Data Access

Data TypeDownload all or Query/FilterLicense
Tissue Slide Images (MRXS, 392 GB)



Tcia button generator
urlhttps://faspex.cancerimagingarchive.net/aspera/faspex/external_deliveries/330?passcode=1daa435815917f7497f97b4811180e1bc7a59515



Tcia button generator
labelSearch
urlhttps://pathdb.cancerimagingarchive.net/imagesearch?f[0]=collection:hungarian_colorectal_screening



(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) 

Tcia cc by 4

Clinical data (CSV)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/91357370/metadata_age_sex_icd10status.csv?version=1&modificationDate=1631736831200&api=v2



Tcia cc by 4



Localtab
titleDetailed Description

Detailed Description

Image Statistics


Modalities

Pathology

Number of Patients

200

Number of Images

200

Images Size (GB)392

Note about the data: 

From the article, these data include hematoxylin- and eosin- (H&E) stained whole slide imaging (WSI), with resolution 0.1213 μm/pixel, as acquired by 3DHistech Pannoramic 1000 Digital Slide Scanner. 


ICD10 explanations

The supporting csv metadata contains ICD10 codes for each slide. Below are some helpful links about this standard and the differences you might see depending on if you use the international ICD10 codes (which are coded with 4 characters), the Hungarian ICD10 codes (which are coded with 5 characters), or the Institute of 2.Pathology and 1.Pathology at the Semmelweis University which use an extended version of ICD10 and has 6 characters. 

Introduction to ICD10:

https://www.cdc.gov/nchs/data/dvs/icd10fct.pdf

https://datadictionary.nhs.uk/supporting_information/international_classification_of_diseases__icd_.html

https://icd.who.int/browse10/Content/statichtml/ICD10Volume2_en_2019.pdf

Code structure, restricted characters, and code length (note that the Hungarian variant does not use * and - ):

https://datadictionary.nhs.uk/data_elements/icd-10_code.html

https://www.cdc.gov/nchs/icd/icd10cm_pcs_background.htm

Further notes:

Some ICD10 codes in the list are shorter than 6 characters. These are older samples from when the institute used only 5 characters.


Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy

Tcia limited license policy

Info
titleData Citation

Pataki, B. A., Olar, A., Ribli, D., Pesti, A., Kontsek, E., Gyongyosi, B., Bilecz, A., Kovács, T., Kovács, K. A., Zsofia, Kiss, A., Szócska, M., Pollner, P., & Csabai, I. (2021). Digital pathological slides from Hungarian (Europe) colorectal cancer screening (Version 2) [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.9CJF-0127


Info
titlePublication Citation

Pataki, B. Á., Olar, A., Ribli, D., Pesti, A., Kontsek, E., Gyöngyösi, B., Bilecz, Á., Kovács, T., Kovács, K. A., Kramer, Z., Kiss, A., Szócska, M., Pollner, P., & Csabai, I. (2022). HunCRC: annotated pathological slides to enhance deep learning applications in colorectal cancer screening. In Scientific Data (Vol. 9, Issue 1). https://doi.org/10.1038/s41597-022-01450-y


Info
titleTCIA Citation

Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI: 10.1007/s10278-013-9622-7

Other Publications Using This Data

TCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk.


Localtab
titleVersions

Version 2 (Current): Updated 2022/09/20

Data TypeDownload all or Query/FilterLicense
Images (MRXS, 392 GB)


Tcia button generator
urlhttps://faspex.cancerimagingarchive.net/aspera/faspex/external_deliveries/330?passcode=1daa435815917f7497f97b4811180e1bc7a59515



Tcia button generator
labelSearch
urlhttps://pathdb.cancerimagingarchive.net/imagesearch?f[0]=collection:hungarian_colorectal_screening



(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) 

Tcia cc by 4

Clinical Data (CSV)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/91357370/metadata_age_sex_icd10status.csv?version=1&modificationDate=1631736831200&api=v2



Tcia cc by 4

Added missing Data0033.dat files from folders 094, 158, 170, & 186

Version 1: Updated 2022/06/03

Data TypeDownload all or Query/FilterLicense
Images (MRXS, 392 GB)


Tcia button generator
urlhttps://faspex.cancerimagingarchive.net/aspera/faspex/external_deliveries/280?passcode=9428233d17a6b8f18d04a820c4c2713d14d1fdfd




(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) 

Tcia cc by 4

Clinical Data (CSV)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/91357370/metadata_age_sex_icd10status.csv?version=1&modificationDate=1631736831200&api=v2



Tcia cc by 4



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