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  • A whole-body FDG-PET/CT dataset with manually annotated tumor lesions (FDG-PET-CT-Lesions)

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Localtab Group


Localtab
activetrue
titleData Access

Data Access

Tcia head license access

Data TypeDownload all or Query/FilterLicense
Images (DICOM, 418.9 GB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/93258287/TCIA_FDG-PET-CT-Lesions_v1.tcia?api=v2



Tcia button generator
labelSearch
urlhttps://nbia.cancerimagingarchive.net/nbia-search/?MinNumberOfStudiesCriteria=1&CollectionCriteria=FDG-PET-CT_Lesions



(Requires NBIA Data Retriever.)

TCIA Restricted

Clinical data (CSV)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/93258287/Clinical%20Metadata%20FDG%20PET_CT%20Lesions.csv?api=v2



CC BY 4.0

Click the Versions tab for more info about data releases.

Additional Resources for this Dataset




Localtab
titleDetailed Description

Detailed Description

Image Statistics

Radiology Image Statistics

Modalities

PT, CT, SEG

Number of Patients

900

Number of Studies

1014

Number of Series

3088

Number of Images

916,957

Images Size (GB)418.9

Notes: 

Here are conversion scripts for these data https://github.com/lab-midas/TCIA_processing

  • Converts DICOM to NIfTI , and also create resampled/resliced CT and an SUV file using tcia_dicom_to_nifti.py (requires install of dicom2nifti and matplotlib)
  • It is straight forward to generate HDF5 files from the NIfTI files using tcia_nifti_to_hdf5.py.
  • Organizes NIfTI into HDF5 structure; note this output is a single large package.

SEG are most easily reviewed as overlay using MITK viewer or 3D Slicer.



Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy

Tcia limited license policy


Info
titleData Citation

Gatidis S, Kuestner T. A whole-body FDG-PET/CT dataset with manually annotated tumor lesions (FDG-PET-CT-Lesions) [Dataset]. The Cancer Imaging Archive, 2022. DOI: 10.7937/gkr0-xv29 


Info
titleTCIA Citation

Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI: 10.1007/s10278-013-9622-7

Other Publications Using This Data

TCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk.


Localtab
titleVersions

Version 1 (Current): Updated 2022/06/02

Data TypeDownload all or Query/FilterLicense
Images (DICOM, 418.9 GB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/93258287/TCIA_FDG-PET-CT-Lesions_v1.tcia?api=v2



Tcia button generator
labelSearch
urlhttps://nbia.cancerimagingarchive.net/nbia-search/?MinNumberOfStudiesCriteria=1&CollectionCriteria=FDG-PET-CT_Lesions



(Requires NBIA Data Retriever.)

TCIA Restricted

Clinical data (CSV)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/93258287/Clinical%20Metadata%20FDG%20PET_CT%20Lesions.csv?api=v2



CC BY 4.0



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