Data Access
Click the
Download
button to save a ".tcia" manifest file to your computer, which you must open with the
NBIA Data Retriever
. Click the
Search
button to open our Data Portal, where you can browse the data collection and/or download a subset of its contents.
Data Type |
Download all or Query/Filter |
Images (DICOM, 4.4 GB) |
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Annotated Whole Slide Pathology Images (76.8 GB)
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Fused Rad-Path Matlab Files |
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Please note that Box has a 15GB download limit, so you will need to download images in batches.
Click the Versions tab for more info about data releases.
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Detailed Description
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Pathology Image Statistics |
Modalities
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MRI
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Pathology, Matlab |
Number of Participants
|
28
|
16 |
Number of Studies
|
29
|
N/A |
Number of Series
|
325 |
N/A |
Number of Images
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32,508
|
114 |
Image Size (GB) |
4.4 |
76.8 |
Supporting Documentation
The data set is fully described in the following publications:
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Singanamalli, A. , Rusu, M. , Sparks, R. E., Shih, N. N., Ziober, A. , Wang, L. , Tomaszewski, J. , Rosen, M. , Feldman, M. and Madabhushi, A. (2016), Identifying in vivo DCE MRI markers associated with microvessel architecture and gleason grades of prostate cancer. J. Magn. Reson. Imaging, 43: 149-158. doi:
10.1002/jmri.24975 (PMID:26110513).
- Toth, R, Feldman, M, Yu, D, Tomaszewski, J, Madabhushi, A, “Histostitcher™: An Informatics Software Platform for Reconstructing Whole-Mount Prostate Histology using the Extensible Imaging Platform (XIP™) Framework,” Journal of Pathology Informatics, vol. 5, pg. 8, 2014 (PMID: 24843820, PMCID: PMC4023035).
- Xiao, G, Bloch, N, Chappelow, J, Genega, E, Rofsky, N, Lenkinsky, R, Tomaszewski, J, Feldman, M, Rosen, M, Madabhushi, A, “Determining Histology-MRI Slice Correspondences for Defining MRI-based Disease Signatures of Prostate Cancer,” Special Issue of Computerized Medical Imaging and Graphics on Whole Slide Microscopic Image Processing, vol. 35[7-8], pp. 568-78, 2011 (PMID: 21255974).
- Chappelow, J, Bloch, N., Rofsky, N, Genega, E, Lenkinski, R, DeWolf, W, Madabhushi, A, “Elastic Registration of Multimodal Prostate MRI and Histology via Multi-Attribute Combined Mutual Information,” Medical Physics, vol. 38[4], pp. 2005-2018, 2011 (PMID: 21626933).
Pathology and Matlab Data
Reconstructed, annotated whole slide pathology as well as fused Rad-Path matlab objects are also available at https://pathology.cancerimagingarchive.net/pathdata/.
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Citations & Data Usage Policy
Madabhushi, A., & Feldman, M. (2016).
Fused Radiology-Pathology Prostate Dataset
. The Cancer Imaging Archive. doi; 10.7937/K9/TCIA.2016.TLPMR1AM
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Singanamalli, A. , Rusu, M. , Sparks, R. E., Shih, N. N., Ziober, A. , Wang, L. , Tomaszewski, J. , Rosen, M. , Feldman, M. and Madabhushi, A. (2016), Identifying in vivo DCE MRI markers associated with microvessel architecture and gleason grades of prostate cancer. J. Magn. Reson. Imaging, 43: 149-158. doi:
10.1002/jmri.24975 (PMID:26110513).
- Toth, R, Feldman, M, Yu, D, Tomaszewski, J, Madabhushi, A, “Histostitcher™: An Informatics Software Platform for Reconstructing Whole-Mount Prostate Histology using the Extensible Imaging Platform (XIP™) Framework,” Journal of Pathology Informatics, vol. 5, pg. 8, 2014 (PMID: 24843820, PMCID: PMC4023035).
- Xiao, G, Bloch, N, Chappelow, J, Genega, E, Rofsky, N, Lenkinsky, R, Tomaszewski, J, Feldman, M, Rosen, M, Madabhushi, A, “Determining Histology-MRI Slice Correspondences for Defining MRI-based Disease Signatures of Prostate Cancer,” Special Issue of Computerized Medical Imaging and Graphics on Whole Slide Microscopic Image Processing, vol. 35[7-8], pp. 568-78, 2011 (PMID: 21255974). https://doi.org/10.1016/j.compmedimag.2010.12.003
- Chappelow, J, Bloch, N., Rofsky, N, Genega, E, Lenkinski, R, DeWolf, W, Madabhushi, A, “Elastic Registration of Multimodal Prostate MRI and Histology via Multi-Attribute Combined Mutual Information,” Medical Physics, vol. 38[4], pp. 2005-2018, 2011 (PMID: 21626933).
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Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. (paper)
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Other Publications Using This Data
TCIA maintains a list of publications that leverage our data. At this time we are not aware of any publications based on this data. If you have a publication you'd like to add, please contact the TCIA Helpdesk.
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Version 1 (Current) Updated 11-30-2016
Data Type |
Download all or Query/Filter |
Images (DICOM, 4.4 GB) |
|
Annotated Whole Slide Pathology Images (76.8 GB) |
|
Fused Rad-Path MATLAB Files |
|
|
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