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Localtab Group



Localtab
activetrue
titleData Access

Data Access

Data TypeDownload all or Query/FilterLicense
Processed images with segmentations and radiomic features - 65 subjects (NIFTI, 536 MB)


Tcia button generator
urlhttps://faspex.cancerimagingarchive.net/aspera/faspex/external_deliveries/89?passcode=48c6c69da7d44989c20f6cf366b7103e19565cfc



(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) 

Tcia cc by 3

BRATS 2018 Test Data Set - 43 subjects (NIFTI, 366 MB)

Please contact the  helpdesk  to request access to these files.

Tcia cc by 3

Click the Versions tab for more info about data releases.

Collections Used in this Third Party Analysis


Below is a list of the Collections used in these analyses:

Data TypeDownload all or Query/FilterLicense
Corresponding Original Images from  TCGA-LGG
 - 108 Subjects (DICOM, 8.5 GB) 


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/24282668/doiJNLP-JAMS4RFq.tcia?api=v2



(Requires NBIA Data Retriever.)

tcia-ccrestricted-by-4license


Please contact help@cancerimagingarchive.net  with any questions regarding usage.


Localtab
titleDetailed Description

Detailed Description

Data resulting from this experiment is available in the following formats:

  • DICOM image format
  • Processed NIFTI images with segmentations and radiomic features


Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy 

Tcia limited license policy

Info
titleData Citation

Bakas S, Akbari H, Sotiras A, Bilello M, Rozycki M, Kirby J, Freymann J, Farahani K, Davatzikos C. (2017) Segmentation Labels and Radiomic Features for the Pre-operative Scans of the TCGA-LGG collection [Data Set]. The Cancer Imaging Archive. DOI:  10.7937/K9/TCIA.2017.GJQ7R0EF


Info
titlePublication Citation

Bakas S, Akbari H, Sotiras A, Bilello M, Rozycki M, Kirby J, Freymann J, Farahani K, Davatzikos C. (2017) Advancing The Cancer Genome Atlas glioma MRI collections with expert segmentation labels and radiomic features. Nature Scientific Data, 4:170117 DOI: 10.1038/sdata.2017.117


Info
titleTCIA Citation

Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. T he Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository , Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. ( paper )

Other Publications Using This Data

TCIA maintains a list of publications that leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk.

  • Aliotta, E., Dutta, S. W., Feng, X., Tustison, N. J., Batchala, P. P., Schiff, D., . . . Patel, S. H. (2020). Automated apparent diffusion coefficient analysis for genotype prediction in lower grade glioma: association with the T2-FLAIR mismatch sign. J Neurooncol, 149(2), 325-335. doi:https://doi.org/10.1007/s11060-020-03611-8
  • Astaraki, M., Wang, C., Carrizo, G., Toma-Dasu, I., & Smedby, Ö. (2020). Multimodal Brain Tumor Segmentation with Normal Appearance Autoencoder. Paper presented at the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, Shenzhen, China.
  • Bhadani, S., Mitra, S., & Banerjee, S. (2020). Fuzzy volumetric delineation of brain tumor and survival prediction. Soft Computing, 24(17), 13115-13134. doi:10.1007/s00500-020-04728-8
    Chan, H.-W., Weng, Y.-T., & Huang, T.-Y. (2020). Automatic Classification of Brain Tumor Types with the MRI Scans and Histopathology Images. Paper presented at the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries Shenzhen, China,.
  • Chen, M., Wu, Y., & Wu, J. (2020). Aggregating Multi-scale Prediction Based on 3D U-Net in Brain Tumor Segmentation. Paper presented at the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries. , Shenzhen, China.
  • Ge, C. (2020). Machine Learning Methods for Image Analysis in Medical Applications From Alzheimer’s Disease, Brain Tumors, to Assisted Living. (Ph. D. Dissertation), Chalmers University of Technology, Göteborg, Sweden. Retrieved from https://research.chalmers.se/publication/517576 10.7937/K9/TCIA.2017.KLXWJJ1Q; 10.7937/K9/TCIA.2017.GJQ7R0EF database.
  • Rafi, A., Ali, J., Akram, T., Fiaz, K., Raza Shahid, A., Raza, B., & Mustafa Madni, T. (2020, March 18-19, 2020). U-Net Based Glioblastoma Segmentation with Patient’s Overall Survival Prediction. Paper presented at the ISICS: International Symposium on Intelligent Computing Systems, Sharjah, United Arab Emirates.
  • Sheller, M. J., Edwards, B., Reina, G. A., Martin, J., Pati, S., Kotrotsou, A., . . . Bakas, S. (2020). Federated learning in medicine: facilitating multi-institutional collaborations without sharing patient data. Sci Rep, 10(1), 12598. doi:https://doi.org/10.1038/s41598-020-69250-1
  • Thakur, S., Doshi, J., Pati, S., Rathore, S., Sako, C., Bilello, M., . . . Bakas, S. (2020). Brain extraction on MRI scans in presence of diffuse glioma: Multi-institutional performance evaluation of deep learning methods and robust modality-agnostic training. Neuroimage, 220, 117081. doi:https://doi.org/10.1016/j.neuroimage.2020.117081
  • Tunga, P. (2019). Extraction of Tumor in Brain MRI using Support Vector Machine and Performance Evaluation. Visvesvaraya Technological University Journal of Engineering Sciences and Management, 1(3), 1-8.
  • Zhang, X., Liu, S., Zhao, X., Shi, X., Li, J., Guo, J., . . . Zhang, X. (2020). Magnetic resonance imaging-based radiomic features for extrapolating infiltration levels of immune cells in lower-grade gliomas. Strahlentherapie und Onkologie, 196(10), 913-921. doi:10.1007/s00066-020-01584-1


Localtab
titleVersions

Version 1 (Current): 2017/07/17


Data TypeDownload all or Query/Filter
Images - 108 subjects (DICOM, 8.5 GB)

Note: Limited Access.
Click the Download  button to save a ".tcia" manifest file to your computer, which you must open with the  NBIA Data Retriever

Processed images with segmentations and radiomic features - 65 subjects (NIFTI, 536 MB)

Download and apply the IBM-Aspera-Connect plugin to your browser

BRATS 2018 Test Data Set - 43 subjects (NIFTI, 366 MB)

Please contact the  helpdesk  to request access to these files.




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