| Info |
|---|
|
Saltz, J., Gupta, R., Hou, L., Kurc, T., Singh, P., Nguyen, V., … Thorsson, V. (2018). Tumor-Infiltrating Lymphocytes Maps from TCGA H&E Whole Slide Pathology Images [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/k9/tcia.2018.y75f9w1 |
Description
Mappings of tumor-infiltrating lymphocytes (TILs), based on H&E images from 13 TCGA tumor types are available here. These TIL maps are derived through computational staining, using a convolutional neural network trained to classify patches of images. In addition to the TIL Maps, the analysis codes and the software used to extract TILs are also available. The accompanying paper contains detailed information about our methods and our findings.
TCGA Tumor Types Used in this Study
BLCABladder urothelial carcinoma
BRCABreast invasive carcinoma
CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
COADColon adenocarcinoma
LUADLung adenocarcinoma
LUSCLung squamous cell carcinoma
PAADPancreatic adenocarcinoma
PRADProstate adenocarcinoma
READRectum adenocarcinoma
SKCMSkin Cutaneous Melanoma
STADStomach adenocarcinoma
UCECUterine Corpus Endometrial Carcinoma
UVMUveal Melanoma
| Localtab Group |
|---|
| Localtab |
|---|
| active | true |
|---|
| title | Data Access |
|---|
| Data AccessClick the Download button to save a ".tcia" manifest file to your computer, which you must open with the NBIA Data Retriever | Data Type | Download all or Query/Filter |
|---|
| TIL Maps | | | Clinical Data | | | H&E Images | |
Note: Please contact help@cancerimagingarchive.net with any questions regarding usage. |
| Localtab |
|---|
| title | Detailed Description |
|---|
| Detailed Description |
| Localtab |
|---|
| title | Citations & Data Usage Policy |
|---|
| Citations & Data Usage Policy These collections are freely available to browse, download, and use for commercial, scientific and educational purposes as outlined in the Creative Commons Attribution 3.0 Unported License. Questions may be directed to help@cancerimagingarchive.net. Please be sure to acknowledge both this data set and TCIA in publications by including the following citations in your work: | Info |
|---|
| Saltz, J., Gupta, R., Hou, L., Kurc, T., Singh, P., Nguyen, V., … Thorsson, V. (2018). Tumor-Infiltrating Lymphocytes Maps from TCGA H&E Whole Slide Pathology Images [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/k9/tcia.2018.y75f9w1 |
| Info |
|---|
| Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. (paper) |
In addition to the dataset citation above, please be sure to cite the following if you utilize these data in your research: | Info |
|---|
| title | Publication Citation |
|---|
| Saltz, J., Gupta, R., Hou, L., Kurc, T., Singh, P., Nguyen, V., . . . Thorsson, V. |
|
|
...
Download
Note: Please contact help@cancerimagingarchive.net with any questions regarding usage.
...
...
QuIP Software Stack
...
| Localtab |
|---|
| Version 1 (Current): 2019/08/02| Data Type | Download all or Query/Filter |
|---|
| TIL Maps | | | Clinical Data | |
|
|
...
...
