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This collection contains prostate’s zonal segmentation for 98 cases randomly selected from the SPIE-AAPM-NCI PROSTATEx Challenge. The four-class segmentation encompasses the peripheral zone, transition zone, fibromuscular stroma and the distal prostatic urethra. As underlying images, we used transversal T2w scans. Segmentations were created by a medical student with experience in prostate segmentation and an expert urologist who instructed the student and double-checked the segmentations in the end. The DICOM representation of these segmentations were generated with dcmqi. Note: If this dataset is used for commercial purposes, please contact office@isg.cs.uni-magdeburg.de
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Acknowledgements
- This work has been funded by the EU and the federal state of Saxony-Anhalt, Germany under grant number ZS/2016/08/80388. We would like to
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Hospital/Institution Name city, state, country - Special thanks to First Last Names, degree PhD, MD, etc from the Department of xxxxxx, Additional Names from same location.
- thank the authors of the PROSTATEx challenge for providing this valuable dataset
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active | true |
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title | Data Access |
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| Data AccessData Type | Download all or Query/Filter |
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Images, Segmentations , and Radiation Therapy Structures/Doses/Plans (DICOM, XX.X GB) << latter two items only if DICOM SEG/RTSTRUCT/RTDOSE/PLAN exist >>
| (Download requires the NBIA Data Retriever)
| Tissue Slide Images (SVS, XX.X GBCorresponding Original MR Images from PROSTATEx (DICOM, MB) | Clinical data (CSV) | Genomics (web) | Tcia button generator |
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Click the Versions tab for more info about data releases. Please contact help@cancerimagingarchive.net with any questions regarding usage. |
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title | Detailed Description |
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| Detailed DescriptionImage Statistics |
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Modalities | SEG | Number of Patients | 98 | Number of Studies | 98 | Number of Series | 98 | Number of Images | 98 | Images Size (GB) |
<< Add any additional information as needed below. Likely would be something from site. >>Note: Please contact help@cancerimagingarchive.net with any questions regarding usage. |
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title | Citations & Data Usage Policy |
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| Citations & Data Usage Policy Tcia license 4 international |
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Tcia license 4 noncommercial |
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Info |
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| DOI goes here. Create using Datacite with information from Collection Approval form |
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title | Publication Citation |
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| We ask on the proposal form if they have ONE traditional publication they'd like users to citeMeyer, M. Rak, D. Schindele, S. Blaschke, M. Schostak, A. Fedorov, C. Hansen, “Towards Patient-Individual PI-RADS v2 Sector Map: CNN for Automatic Segmentation of Prostatic Zones from T2-Weighted MRI”, 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), Venice, Italy, 2019, pp. 696-700, doi: 10.1109/ISBI.2019.8759572. |
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| Only if they ask for special acknowledgments like funding sources, grant numbers, etc in their proposal. |
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| Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI: 10.1007/s10278-013-9622-7 |
Other Publications Using This DataTCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk. |
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| Version X (Current): Updated yyyy/mm/ddData Type | Download all or Query/Filter |
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Images (DICOM, xx.x GB) | | Clinical Data (CSV) | Link | Other (format) | |
<< One or two sentences about what you changed since last version. No note required for version 1. >> |
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