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active | true |
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title | Data Access |
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| Data Access
Be sure to "request dataset" with these : DICOM-Glioma-SEG, TCGA-GBM, and TCGA-LGG in your Agreement on page 1 so that we can process your request efficiently. Complete all pages.Click the Download button to save a ".tcia" manifest file to your computer, which you must open with the NBIA Data Retriever
Data Type | Download all or Query/Filter |
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TCGA-LGG images - 65 subjects License |
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Segmentations (DICOM, | 17 | TCGA-GBM images - 102 subjects (DICOM, 32 GB) | | Segmentations - (DICOM, 4 GB) | | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/41517733/TCGA-GBM%20MR%20Images%20DICOM%20Seg%20Conversions%20NBIA-manifest%20April%202020.tcia?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?CollectionCriteria=TCGA-GBM,TCGA-LGG?text-search=ow6ce3ml |
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(Download requires the NBIA Data Retriever and permission) | | DCMQI Metadata (JSON , TXT, | DCMQI Metadata (Image Removed
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/41517733/TCGA_Segmentation%20DCMQI%20Metadata.zip?api=v2 |
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| | TCGA key mapping (CSV) | Image Removed |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/41517733/TCGA_DSO_Key.csv?api=v2 |
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Please contact help@cancerimagingarchive.net with any questions regarding usage. Collections Used in this Third Party AnalysisBelow is a list of the Collections used in these analyses:
Data Type | Download all or Query/Filter | License |
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Corresponding Original MR Images from TCGA-LGG images 65 subjects (DICOM, MR, 17 GB) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/41517733/doiJNLP-JAMS4RFq.tcia?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?ImageModalityCriteria=MR&MinNumberOfStudiesCriteria=1&PatientCriteria=TCGA-CS-4942,TCGA-CS-4944,TCGA-CS-5393,TCGA-CS-5396,TCGA-CS-5397,TCGA-CS-6186,TCGA-CS-6188,TCGA-CS-6665,TCGA-CS-6666,TCGA-CS-6668,TCGA-CS-6669,TCGA-DU-5851,TCGA-DU-5854,TCGA-DU-5855,TCGA-DU-5872,TCGA-DU-5874,TCGA-DU-6404,TCGA-DU-6542,TCGA-DU-7008,TCGA-DU-7010,TCGA-DU-7014,TCGA-DU-7015,TCGA-DU-7018,TCGA-DU-7019,TCGA-DU-7294,TCGA-DU-7298,TCGA-DU-7299,TCGA-DU-7300,TCGA-DU-7301,TCGA-DU-7302,TCGA-DU-7304,TCGA-DU-7306,TCGA-DU-7309,TCGA-DU-8162,TCGA-DU-8164,TCGA-DU-8166,TCGA-DU-8167,TCGA-DU-8168,TCGA-DU-A5TR,TCGA-DU-A5TS,TCGA-DU-A5TT,TCGA-DU-A5TU,TCGA-DU-A5TW,TCGA-DU-A5TY,TCGA-DU-A6S7,TCGA-DU-A6S8,TCGA-FG-5964,TCGA-FG-6689,TCGA-FG-6691,TCGA-FG-6692,TCGA-FG-7634,TCGA-FG-A4MT,TCGA-HT-7473,TCGA-HT-7602,TCGA-HT-7680,TCGA-HT-7686,TCGA-HT-7690,TCGA-HT-7694,TCGA-HT-7879,TCGA-HT-7884,TCGA-HT-8018,TCGA-HT-8111,TCGA-HT-8114,TCGA-HT-8563,TCGA-HT-A61A |
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(Download requires the NBIA Data Retriever and permission) | | Corresponding Original MR Images from TCGA-GBM images 102 subjects (DICOM, MR, 32 GB) |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/41517733/doiJNLP-QoOaKUdn.tcia?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?ImageModalityCriteria=MR&MinNumberOfStudiesCriteria=1&PatientCriteria=TCGA-02-0006,TCGA-02-0009,TCGA-02-0011,TCGA-02-0027,TCGA-02-0033,TCGA-02-0034,TCGA-02-0037,TCGA-02-0046,TCGA-02-0047,TCGA-02-0054,TCGA-02-0059,TCGA-02-0064,TCGA-02-0068,TCGA-02-0069,TCGA-02-0070,TCGA-02-0075,TCGA-02-0085,TCGA-02-0086,TCGA-02-0087,TCGA-02-0102,TCGA-02-0106,TCGA-02-0116,TCGA-06-0119,TCGA-06-0122,TCGA-06-0130,TCGA-06-0137,TCGA-06-0138,TCGA-06-0139,TCGA-06-0142,TCGA-06-0145,TCGA-06-0149,TCGA-06-0154,TCGA-06-0158,TCGA-06-0162,TCGA-06-0164,TCGA-06-0176,TCGA-06-0177,TCGA-06-0179,TCGA-06-0182,TCGA-06-0184,TCGA-06-0185,TCGA-06-0187,TCGA-06-0188,TCGA-06-0190,TCGA-06-0192,TCGA-06-0238,TCGA-06-0240,TCGA-06-0644,TCGA-06-0646,TCGA-06-1084,TCGA-06-1802,TCGA-06-2570,TCGA-06-5408,TCGA-06-5413,TCGA-06-5417,TCGA-06-6389,TCGA-08-0355,TCGA-08-0356,TCGA-08-0359,TCGA-08-0360,TCGA-08-0385,TCGA-08-0389,TCGA-08-0390,TCGA-08-0392,TCGA-08-0509,TCGA-08-0512,TCGA-08-0520,TCGA-08-0522,TCGA-12-0616,TCGA-12-0776,TCGA-12-0829,TCGA-12-1094,TCGA-12-1098,TCGA-12-1598,TCGA-12-1601,TCGA-12-3650,TCGA-14-1456,TCGA-14-1794,TCGA-14-1825,TCGA-14-3477,TCGA-19-0963,TCGA-19-1789,TCGA-19-2624,TCGA-19-2631,TCGA-19-5951,TCGA-19-5954,TCGA-19-5958,TCGA-19-5960,TCGA-76-4932,TCGA-76-4934,TCGA-76-4935,TCGA-76-6191,TCGA-76-6193,TCGA-76-6280,TCGA-76-6282,TCGA-76-6285,TCGA-76-6656,TCGA-76-6657,TCGA-76-6661,TCGA-76-6662,TCGA-76-6663,TCGA-76-6664 |
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(Download requires the NBIA Data Retriever and permission) | |
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Localtab |
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title | Detailed Description |
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| Detailed Description
Collection | Radiology Imaging Statistics | Number of Studies | 168* | Number of Series | 1304 | Number of Patients | 167 | Number of Images | 1304 | Modalities | SEG | Image Size (GB) | 4 |
*For TCGA-GBM patient TCGA-06-0192, there were 2 studies. |
Localtab |
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title | Citations & Data Usage Policy |
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| Citations & Data Usage Policy These collections are freely available to browse, download, and use for commercial, scientific and educational purposes as outlined in the Creative Commons Attribution 3.0 Unported License. Questions may be directed to help@cancerimagingarchive.net. Please be sure to acknowledge both this data set and TCIA in publications by including the following citations in your work: Tcia limited license policy |
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Info |
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| Andrew Beers, A., Elizabeth Gerstner, E., Bruce Rosen, David B., Clunie, Steve D., Pieper, Andrey Fedorov, Jayashree S., Fedorov, A., & Kalpathy-Cramer, J. (2018). DICOM-SEG Conversions for TCGA-LGG and TCGA-GBM Segmentation Datasets [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.2018.ow6ce3ml |
Info |
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title | Publication Citation |
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| Bakas, S., Akbari, H., Sotiras, A., Bilello, M., Rozycki, M., Kirby, J. S., Freymann, J. B., Farahani, K., & Davatzikos, C. (2017). Advancing The Cancer Genome Atlas glioma MRI collections with expert segmentation labels and radiomic features. Scientific Data, 4(1). https://doi.org/10.1038/sdata.2017.117 https://www.nature.com/articles/sdata2017117 |
Info |
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| Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F. (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, . Journal of Digital Imaging, Volume 26, Number 6 pp 1045-1057. DOI: (6), 1045–1057. https://doi.org/10.1007/s10278-013-9622-7 |
In addition to the dataset citation above, please be sure to cite the following if you utilize these data in your research:
Info |
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title | Publication Data Citation |
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| Spyridon Bakas, Hamed Akbari, Aristeidis Sotiras, Michel Bilello, Michel Rozycki, Justin S Kirby, John B Freymann, Keyvan Farahani, Christos Davatzikos. "Advancing The Cancer Genome Atlas glioma MRI collections with expert segmentation labels and radiomic features", Nature Scientific Data, 4:170117 doi: 10.1038/sdata.2017.117 (2017). https://www.nature.com/articles/sdata2017117
| Info |
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| Spyridon Bakas, Hamed Akbari, Aristeidis Sotiras, Michel Bilello, Martin Rozycki, Justin Kirby, John Freymann, Keyvan Farahani, and Christos Davatzikos. (2017) Segmentation Labels and Radiomic Features S., Akbari, H., Sotiras, A., Bilello, M., Rozycki, M., Kirby, J., Freymann, J., Farahani, K., & Davatzikos, C. (2017). Segmentation Labels for the Pre-operative Scans of the TCGA-LGG collection [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/K9/TCIA.2017.GJQ7R0EF |
Info |
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| Spyridon Bakas, Hamed S., Akbari, Aristeidis Sotiras, Michel Bilello, Martin Rozycki, Justin Kirby, John Freymann, Keyvan Farahani, and Christos DavatzikosH., Sotiras, A., Bilello, M., Rozycki, M., Kirby, J., Freymann, J., Farahani, K., & Davatzikos, C. (2017). Segmentation Labels and Radiomic Features for the Pre-operative Scans of the TCGA-GBM collection[Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/K9/TCIA.2017.KLXWJJ1Q |
Other Publications Using This DataTCIA maintains a list of publications that leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA's Helpdesk. |
Localtab |
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| Version 1 (Current): 2020/04/30Data Type | Download all or Query/Filter | License |
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Segmentations (DICOM, 4 GB) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/41517733/TCGA-GBM%20MR%20Images%20DICOM%20Seg%20Conversions%20NBIA-manifest%20April%202020.tcia?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?CollectionCriteria=TCGA-GBM,TCGA-LGG |
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| images - (Download requires the NBIA Data Retriever and permission) | | DCMQI Metadata (JSON , TXT, ZIP, 3.1 MB) |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/41517733/TCGA_Segmentation%20DCMQI%20Metadata.zip?api=v2 |
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| | TCGA key mapping (CSV) |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/41517733/TCGA_DSO_Key.csv?api=v2 |
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| | Corresponding Original MR Images from TCGA-LGG images 65 subjects (DICOM, MR, 17 GB) |
| | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/41517733/doiJNLP-JAMS4RFq.tcia?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?ImageModalityCriteria=MR&MinNumberOfStudiesCriteria=1&PatientCriteria=TCGA-CS-4942,TCGA-CS-4944,TCGA-CS-5393,TCGA-CS-5396,TCGA-CS-5397,TCGA-CS-6186,TCGA-CS-6188,TCGA-CS-6665,TCGA-CS-6666,TCGA-CS-6668,TCGA-CS-6669,TCGA-DU-5851,TCGA-DU-5854,TCGA-DU-5855,TCGA-DU-5872,TCGA-DU-5874,TCGA-DU-6404,TCGA-DU-6542,TCGA-DU-7008,TCGA-DU-7010,TCGA-DU-7014,TCGA-DU-7015,TCGA-DU-7018,TCGA-DU-7019,TCGA-DU-7294,TCGA-DU-7298,TCGA-DU-7299,TCGA-DU-7300,TCGA-DU-7301,TCGA-DU-7302,TCGA-DU-7304,TCGA-DU-7306,TCGA-DU-7309,TCGA-DU-8162,TCGA-DU-8164,TCGA-DU-8166,TCGA-DU-8167,TCGA-DU-8168,TCGA-DU-A5TR,TCGA-DU-A5TS,TCGA-DU-A5TT,TCGA-DU-A5TU,TCGA-DU-A5TW,TCGA-DU-A5TY,TCGA-DU-A6S7,TCGA-DU-A6S8,TCGA-FG-5964,TCGA-FG-6689,TCGA-FG-6691,TCGA-FG-6692,TCGA-FG-7634,TCGA-FG-A4MT,TCGA-HT-7473,TCGA-HT-7602,TCGA-HT-7680,TCGA-HT-7686,TCGA-HT-7690,TCGA-HT-7694,TCGA-HT-7879,TCGA-HT-7884,TCGA-HT-8018,TCGA-HT-8111,TCGA-HT-8114,TCGA-HT-8563,TCGA-HT-A61A |
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(Download requires the NBIA Data Retriever and permission) | | Corresponding Original MR Images from TCGA-GBM images | TCGA-GBM images - 102 subjects (DICOM, MR, 32 GB) |
| Segmentations - (DICOM, 4 GB) | | DCMQI Metadata (ZIP, 3.1 MB) | |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/41517733/doiJNLP-QoOaKUdn.tcia?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?ImageModalityCriteria=MR&MinNumberOfStudiesCriteria=1&PatientCriteria=TCGA-02-0006,TCGA-02-0009,TCGA-02-0011,TCGA-02-0027,TCGA-02-0033,TCGA-02-0034,TCGA-02-0037,TCGA-02-0046,TCGA-02-0047,TCGA-02-0054,TCGA-02-0059,TCGA-02-0064,TCGA-02-0068,TCGA-02-0069,TCGA-02-0070,TCGA-02-0075,TCGA-02-0085,TCGA-02-0086,TCGA-02-0087,TCGA-02-0102,TCGA-02-0106,TCGA-02-0116,TCGA-06-0119,TCGA-06-0122,TCGA-06-0130,TCGA-06-0137,TCGA-06-0138,TCGA-06-0139,TCGA-06-0142,TCGA-06-0145,TCGA-06-0149,TCGA-06-0154,TCGA-06-0158,TCGA-06-0162,TCGA-06-0164,TCGA-06-0176,TCGA-06-0177,TCGA-06-0179,TCGA-06-0182,TCGA-06-0184,TCGA-06-0185,TCGA-06-0187,TCGA-06-0188,TCGA-06-0190,TCGA-06-0192,TCGA-06-0238,TCGA-06-0240,TCGA-06-0644,TCGA-06-0646,TCGA-06-1084,TCGA-06-1802,TCGA-06-2570,TCGA-06-5408,TCGA-06-5413,TCGA-06-5417,TCGA-06-6389,TCGA-08-0355,TCGA-08-0356,TCGA-08-0359,TCGA-08-0360,TCGA-08-0385,TCGA-08-0389,TCGA-08-0390,TCGA-08-0392,TCGA-08-0509,TCGA-08-0512,TCGA-08-0520,TCGA-08-0522,TCGA-12-0616,TCGA-12-0776,TCGA-12-0829,TCGA-12-1094,TCGA-12-1098,TCGA-12-1598,TCGA-12-1601,TCGA-12-3650,TCGA-14-1456,TCGA-14-1794,TCGA-14-1825,TCGA-14-3477,TCGA-19-0963,TCGA-19-1789,TCGA-19-2624,TCGA-19-2631,TCGA-19-5951,TCGA-19-5954,TCGA-19-5958,TCGA-19-5960,TCGA-76-4932,TCGA-76-4934,TCGA-76-4935,TCGA-76-6191,TCGA-76-6193,TCGA-76-6280,TCGA-76-6282,TCGA-76-6285,TCGA-76-6656,TCGA-76-6657,TCGA-76-6661,TCGA-76-6662,TCGA-76-6663,TCGA-76-6664 |
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(Download requires the NBIA Data Retriever and permission) | |
TCGA key mapping (CSV) | Image Removed
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