Description
This data set was created for use in the NCI-ISBI 2013 Challenge - Automated Segmentation of Prostate Structures. The challenge data set was divided into 3 parts including training, leaderboard and test data sets. This allowed participants to prepare their algorithms and test their results prior to submitting to a final test phase for selecting the winner.
Image data were selected from PROSTATE-DIAGNOSIS and Prostate-3T collections on TCIA. Cases consist of axial scans with half obtained at 1.5 T (Philips Achieva) with an endo-rectal receiver coil (fromBostonMedicalCenter) and the other half at 3T (Siemens TIM) with a surface coil (from Radboud University Nijmegen Medical Centre [RUNMC],Netherlands). They were acquired as T2-weighted MR axial pulse sequences with either 4 mm thick slices at 3T or 3 mm thick at 1.5T. Each file contains nearly all DICOM acquisition parameters except tags that specifically identify Private Health Information.
Each case has had central gland (CG) and peripheral zone (PZ) outlines marked by Drs. Nicolas Bloch (Boston University School of Medicine) and Mirabela Rusu (Case Western University) or Drs. Henkjan Huisman, Geert Litjens, or Jurgen Futterer at RUNMC Netherlands.
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title | Data Access |
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| Data AccessClick the Download button to save a ".tcia" manifest file to your computer, which you must open with the NBIA Data Retriever
Data Type | Download all or Query/Filter | License |
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Image NCI Challenge Data - Training ( | DICOMzip, NRRD, 280 kb, 60 subjects) |
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url | https://wiki.cancerimagingarchive.net/download/attachments/21267207/NCI-ISBI%202013%20Prostate%20Challenge%20-%20Training.zip?api=v2 |
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| | NCI Challenge Data - Leaderboard ( | DICOMzip, NRRD, 59 kb, 10 subjects) |
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url | https://wiki.cancerimagingarchive.net/download/attachments/21267207/NCI-ISBI%202013%20Prostate%20Challenge%20-%20Leaderboard.zip?api=v2 |
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| | NCI Challenge Data - Test ( | DICOMzip, NRRD, 53 kb, 10 subjects) |
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url | https://wiki.cancerimagingarchive.net/download/attachments/21267207/NCI-ISBI%202013%20Prostate%20Challenge%20-%20Test.zip?api=v2 |
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Please contact help@cancerimagingarchive.net with any questions regarding usage. Collections Used in this Third Party Analysis Below is a list of the Collections used in these analyses: Source Data Type | Download all or Query/Filter | License |
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Source Image Data - Training ( | NRRDDICOM, 60 subjects, 60 studies, 60 series, 1555 images , 416 MB) |
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url | https://wiki.cancerimagingarchive.net/download/attachments/21267207/ISBI-Prostate-Challenge-Training.tcia?api=v2 |
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| | Source Image | NCI Challenge NRRD) | NCI Challenge , 10 studies, 10 series, 261 images , 85 MB) |
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url | https://wiki.cancerimagingarchive.net/download/attachments/21267207/ISBI-Prostate-Challenge-LeaderBoard.tcia?api=v2 |
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| | Source Image Data - Test ( | NRRD) | Please contact help@cancerimagingarchive.net with any questions regarding usage. , 10 studies, 10 series, 271 images , 81 MB ) |
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url | https://wiki.cancerimagingarchive.net/download/attachments/21267207/ISBI-Prostate-Challenge-Testing.tcia?api=v2 |
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title | Detailed Description |
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| Detailed DescriptionEach case has had central gland (CG) and peripheral zone (PZ) outlines marked by Drs. Nicolas Bloch (Boston University School of Medicine) and Mirabela Rusu (Case Western University) or Drs. Henkjan Huisman, Geert Litjens, or Jurgen Futterer at RUNMC Netherlands.
Training Data can be further split by source Collection: |
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title | Citations & Data Usage Policy |
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| Citations & Data Usage Policy These collections are freely available to browse, download, and use for commercial, scientific and educational purposes as outlined in the Creative Commons Attribution 3.0 Unported License. Questions may be directed to help@cancerimagingarchive.net. Please be sure to acknowledge both this data set and TCIA in publications by including the following citations in your work: Public collection license |
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| Nicholas Bloch N, Anant Madabhushi A, Henkjan Huisman H, John Freymann J, Justin Kirby J, Michael Grauer M, Andinet Enquobahrie A, Carl Jaffe C, Larry Clarke L, Keyvan Farahani K. (2015). NCI-ISBI 2013 Challenge: Automated Segmentation of Prostate Structures. The Cancer Imaging Archive. http://doi.org/10.7937/K9/TCIA.2015.zF0vlOPv |
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| Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The (2013) The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. (paper)DOI: https://doi.org/10.1007/s10278-013-9622-7 |
Other Publications Using This DataTCIA maintains a list of publications that leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk. |
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| Version 1 (Current): 2015/08/20Data Type | Download all or Query/Filter | License |
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Image Data - Training (DICOM, 60 subjects) | Image Removed |
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url | https://wiki.cancerimagingarchive.net/download/attachments/21267207/ISBI-Prostate-Challenge-Training.tcia?api=v2 |
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| | Image Data - Leaderboard (DICOM, 10 subjects) | Image Removed |
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url | https://wiki.cancerimagingarchive.net/download/attachments/21267207/ISBI-Prostate-Challenge-LeaderBoard.tcia?api=v2 |
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| | Image Data - Test (DICOM, 10 subjects) | Image Removed |
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url | https://wiki.cancerimagingarchive.net/download/attachments/21267207/ISBI-Prostate-Challenge-Testing.tcia?api=v2 |
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| | NCI Challenge Data - Training (NRRD, 60 subjects) | Image Removed
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url | https://wiki.cancerimagingarchive.net/download/attachments/21267207/NCI-ISBI%202013%20Prostate%20Challenge%20-%20Training.zip?api=v2 |
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| | NCI Challenge Data - Leaderboard (NRRD, 10 subjects) | Image Removed |
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url | https://wiki.cancerimagingarchive.net/download/attachments/21267207/NCI-ISBI%202013%20Prostate%20Challenge%20-%20Leaderboard.zip?api=v2 |
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| | NCI Challenge Data - Test (NRRD, 10 subjects) | Image Removed |
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url | https://wiki.cancerimagingarchive.net/download/attachments/21267207/NCI-ISBI%202013%20Prostate%20Challenge%20-%20Test.zip?api=v2 |
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