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  • Image Data Used in the Simulations of "The Role of Image Compression Standards in Medical Imaging: Current Status and Future Trends" (Image-Compression-Simulation)

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Summary

These are the 3D image data used in the simulations of the paper "The Role of Image Compression Standards in Medical Imaging: Current Status and Future Trends". 10 series per collection were selected from ACRIN 6664 (CT COLONOGRAPHY (ACRIN 6664), Data from The Lung Image Database Consortium (LIDC) and Image Database Resource Initiative (IDRI): A completed reference database of lung nodules on CT scans (LIDC-IDRI), The Cancer Genome Atlas Breast Invasive Carcinoma Collection (TCGA-BRCA), and The Cancer Genome Atlas Glioblastoma Multiforme Collection (TCGA-GBM) for analysis.  Lossless and lossy compression algorithms, including JPEG, JPEG-LS, JPEG-XR, JPEG2000, HEVC, are used to compress and decompress the images. Their performances are compared in the paper.

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Localtab Group


Localtab
activetrue
titleData Access

Data Access

Collections Used in this Third Party Analysis

Below is a list of the Collections used in these analyses:

Data TypeDownload all or Query/FilterLicense
Subset of
Corresponding Original Images from CT COLONOGRAPHY
Images
(DICOM)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/22518423/doiJNLP_TCGA-COLONOGRAPHY_Data.tcia?api=v2

Download CT COLONOGRAPHY subset

(Download

requires the 

requires NBIA Data Retriever)

Tcia cc by 3

Subset of
Corresponding Original Images from LIDC-IDRI
images
(DICOM)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/22518423/doiJNLP_LIDC-IDRI_Data.tcia?api=v2

Download LIDC-IDRI subset

(Download

requires the 

requires NBIA Data Retriever)

Tcia cc by 3

Subset of
Corresponding Original Images from TCGA-BRCA
images
(DICOM)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/22518423/doiJNLP_TCGA-BRCA_Data.tcia?api=v2

Download TCGA-BRCA subset

(Download

requires the 

requires NBIA Data Retriever)

Tcia cc by 3

Subset of
Corresponding Original Images from TCGA-GBM
images
(DICOM)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/22518423/doiJNLP_TCGA-GBM_Data.tcia?api=v2

Limited access TCGA-GBM subset

(Download

requires the 

requires NBIA Data Retriever)

NOTE: LIMITED ACCESS

tcia-

head

restricted-license

-access
Message Box
iconemail
titleIn the COLLECTION box on your form
typehint
classgeneric

include both

  1. Scarpace, L. et al TCGA-GBM https://doi.org/10.7937/K9/TCIA.2016.RNYFUYE9
  2. Liu, F. et al. Image Data Used in the Simulations of "The Role of Image Compression Standards in Medical Imaging: Current Status and Future Trends".  https://doi.org/10.7937/K9/TCIA.2016.xHsOkCdc
Please contact help@cancerimagingarchive.net with any questions regarding usage.



Localtab
titleDetailed Description

Detailed Description

This Collection used subsets of existing TCIA data. 

Collection StatisticsRadiology
ModalitiesMR,CT
Number of Participants37
Number of Studies40
Number of Series40
Number of Images9,252
Image Size (GB)3.9

manifest (note: includes limited-access data):   metadata.csv


Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy 

These collections are freely available to browse, download, and use for commercial, scientific and educational purposes as outlined in the Creative Commons Attribution 3.0 Unported License. Questions may be directed to help@cancerimagingarchive.net. Please be sure to acknowledge both this data set and TCIA in publications by including the following citations in your work:

Tcia limited license policy

Info
titleData Citation

Liu, Feng; F., Hernandez-Cabronero, Miguel; Sanchez, Victor; Marcellin, Michael W.; Bilgin, AliCabrero, M., Sanchez, V., Marcellin, M. W., & Bilgin, A. (2016). Image Data Used in the Simulations of " The Role of Image Compression Standards in Medical Imaging: Current Status and Future Trends "(Image-Compression-Simulation) [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/K9/TCIA.2016.xHs

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https://doi.org/10.7937/K9/TCIA.2016.xHsOkCdcOkCdc


Info
titlePublication Citation

Liu, F., Feng;  Hernandez-Cabronero,  Miguel; Sanchez, Victor; Marcellin, Michael W.; Bilgin, AliM., Sanchez, V., Marcellin, M., & Bilgin, A. (2017). The Current Role of Image Compression Standards in Medical Imaging. In Information (Vol. 8(4):131-157. doi:10.3390/info8040131  http, Issue 4, p. 131). MDPI AG. https://wwwdoi.mdpiorg/10.com/2078-2489/8/4/1313390/info8040131


Info
titleTCIA Citation

Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F. The . (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, . In Journal of Digital Imaging , Volume (Vol. 26, Number Issue 6, December, 2013, pp 1045-1057. DOI: pp. 1045–1057). Springer Science and Business Media LLC. https://doi.org/10.1007/s10278-013-9622-7 PMCID: PMC3824915


Other Publications Using This Data

TCIA maintains a list of publications that leverage TCIA our data. If you have a manuscript you'd like to add please contact the TCIA's Helpdesk.


include both

  • Scarpace, L. et al TCGA-GBM https://doi.org/10.7937/K9/TCIA.2016.RNYFUYE9
    • Liu, F. et al. Image Data Used in the Simulations of "The Role of Image Compression Standards in Medical Imaging: Current Status and Future Trends".  https://doi.org/10.7937/K9/TCIA.2016.xHsOkCdc
    Localtab
    titleVersions

    Version 1 (Current): 2016/12/08

    Data TypeDownload all or Query/FilterLicense
    CT Images (DICOM)


    Tcia button generator
    urlhttps://wiki.cancerimagingarchive.net/download/attachments/22518423/doiJNLP_TCGA-COLONOGRAPHY_Data.tcia?api=v2

    Download CT COLONOGRAPHY subset

    (Download requires the NBIA Data Retriever)

    Tcia cc by 3

    LIDC images (DICOM)


    Tcia button generator
    urlhttps://wiki.cancerimagingarchive.net/download/attachments/22518423/doiJNLP_LIDC-IDRI_Data.tcia?api=v2

    Download LIDC-IDRI subset

    (Download requires the NBIA Data Retriever)

    Tcia cc by 3

    TCGA-BRCA images (DICOM)


    Tcia button generator
    urlhttps://wiki.cancerimagingarchive.net/download/attachments/22518423/doiJNLP_TCGA-BRCA_Data.tcia?api=v2

    Download TCGA-BRCA subset

    (Download requires the NBIA Data Retriever)

    Tcia cc by 3

    TCGA-GBM images (DICOM)


    Tcia button generator
    urlhttps://wiki.cancerimagingarchive.net/download/attachments/22518423/doiJNLP_TCGA-GBM_Data.tcia?api=v2

    Limited access TCGA-GBM subset

    (Download requires the NBIA Data Retriever)

    NOTE: LIMITED ACCESS



    tcia-

    head-license-access
    Message Box
    iconemail
    titleIn the COLLECTION box on your form
    typehint
    classgeneric

    restricted-license