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active | true |
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title | Data Access |
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| Data AccessClick the Download button to save a ".tcia" manifest file to your computer, which you must open with the NBIA Data Retriever Be sure to "request dataset" with these : DICOM-Glioma-SEG, TCGA-GBM, and TCGA-LGG in your Agreement on page 1 so that we can process your request efficiently. Complete all pages.
Data Type | Download all or Query/Filter | License |
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TCGA-LGG images - 65 subjects 17 Image Removed Image Removed restrictedlicenseTCGA-GBM images - 102 subjects (DICOM, 32 GB) | | | generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/41517733/TCGA-GBM%20MR%20Images%20DICOM%20Seg%20Conversions%20NBIA-manifest%20April%202020.tcia?api=v2 |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?CollectionCriteria=TCGA-GBM,TCGA-LGG?text-search=ow6ce3ml |
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(Download requires the NBIA Data Retriever and permission) |
Segmentations - (DICOM, 4 GB) | Image Removed Image Removed | | DCMQI Metadata (JSON , TXT, ZIP, 3.1 MB) |
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url | https://wiki.cancerimagingarchive.net/download/attachments/41517733/TCGA_Segmentation%20DCMQI%20Metadata.zip?api=v2 |
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| | TCGA key mapping (CSV) |
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url | https://wiki.cancerimagingarchive.net/download/attachments/41517733/TCGA_DSO_Key.csv?api=v2 |
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Please contact help@cancerimagingarchive.net with any questions regarding usage. Collections Used in this Third Party AnalysisBelow is a list of the Collections used in these analyses:
Data Type | Download all or Query/Filter | License |
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Corresponding Original MR Images from TCGA-LGG images 65 subjects (DICOM, MR, 17 GB) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/41517733/doiJNLP-JAMS4RFq.tcia?api=v2 |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?ImageModalityCriteria=MR&MinNumberOfStudiesCriteria=1&PatientCriteria=TCGA-CS-4942,TCGA-CS-4944,TCGA-CS-5393,TCGA-CS-5396,TCGA-CS-5397,TCGA-CS-6186,TCGA-CS-6188,TCGA-CS-6665,TCGA-CS-6666,TCGA-CS-6668,TCGA-CS-6669,TCGA-DU-5851,TCGA-DU-5854,TCGA-DU-5855,TCGA-DU-5872,TCGA-DU-5874,TCGA-DU-6404,TCGA-DU-6542,TCGA-DU-7008,TCGA-DU-7010,TCGA-DU-7014,TCGA-DU-7015,TCGA-DU-7018,TCGA-DU-7019,TCGA-DU-7294,TCGA-DU-7298,TCGA-DU-7299,TCGA-DU-7300,TCGA-DU-7301,TCGA-DU-7302,TCGA-DU-7304,TCGA-DU-7306,TCGA-DU-7309,TCGA-DU-8162,TCGA-DU-8164,TCGA-DU-8166,TCGA-DU-8167,TCGA-DU-8168,TCGA-DU-A5TR,TCGA-DU-A5TS,TCGA-DU-A5TT,TCGA-DU-A5TU,TCGA-DU-A5TW,TCGA-DU-A5TY,TCGA-DU-A6S7,TCGA-DU-A6S8,TCGA-FG-5964,TCGA-FG-6689,TCGA-FG-6691,TCGA-FG-6692,TCGA-FG-7634,TCGA-FG-A4MT,TCGA-HT-7473,TCGA-HT-7602,TCGA-HT-7680,TCGA-HT-7686,TCGA-HT-7690,TCGA-HT-7694,TCGA-HT-7879,TCGA-HT-7884,TCGA-HT-8018,TCGA-HT-8111,TCGA-HT-8114,TCGA-HT-8563,TCGA-HT-A61A |
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(Download requires the NBIA Data Retriever and permission) | | Corresponding Original MR Images from TCGA-GBM images 102 subjects (DICOM, MR, 32 GB) |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/41517733/doiJNLP-QoOaKUdn.tcia?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?ImageModalityCriteria=MR&MinNumberOfStudiesCriteria=1&PatientCriteria=TCGA-02-0006,TCGA-02-0009,TCGA-02-0011,TCGA-02-0027,TCGA-02-0033,TCGA-02-0034,TCGA-02-0037,TCGA-02-0046,TCGA-02-0047,TCGA-02-0054,TCGA-02-0059,TCGA-02-0064,TCGA-02-0068,TCGA-02-0069,TCGA-02-0070,TCGA-02-0075,TCGA-02-0085,TCGA-02-0086,TCGA-02-0087,TCGA-02-0102,TCGA-02-0106,TCGA-02-0116,TCGA-06-0119,TCGA-06-0122,TCGA-06-0130,TCGA-06-0137,TCGA-06-0138,TCGA-06-0139,TCGA-06-0142,TCGA-06-0145,TCGA-06-0149,TCGA-06-0154,TCGA-06-0158,TCGA-06-0162,TCGA-06-0164,TCGA-06-0176,TCGA-06-0177,TCGA-06-0179,TCGA-06-0182,TCGA-06-0184,TCGA-06-0185,TCGA-06-0187,TCGA-06-0188,TCGA-06-0190,TCGA-06-0192,TCGA-06-0238,TCGA-06-0240,TCGA-06-0644,TCGA-06-0646,TCGA-06-1084,TCGA-06-1802,TCGA-06-2570,TCGA-06-5408,TCGA-06-5413,TCGA-06-5417,TCGA-06-6389,TCGA-08-0355,TCGA-08-0356,TCGA-08-0359,TCGA-08-0360,TCGA-08-0385,TCGA-08-0389,TCGA-08-0390,TCGA-08-0392,TCGA-08-0509,TCGA-08-0512,TCGA-08-0520,TCGA-08-0522,TCGA-12-0616,TCGA-12-0776,TCGA-12-0829,TCGA-12-1094,TCGA-12-1098,TCGA-12-1598,TCGA-12-1601,TCGA-12-3650,TCGA-14-1456,TCGA-14-1794,TCGA-14-1825,TCGA-14-3477,TCGA-19-0963,TCGA-19-1789,TCGA-19-2624,TCGA-19-2631,TCGA-19-5951,TCGA-19-5954,TCGA-19-5958,TCGA-19-5960,TCGA-76-4932,TCGA-76-4934,TCGA-76-4935,TCGA-76-6191,TCGA-76-6193,TCGA-76-6280,TCGA-76-6282,TCGA-76-6285,TCGA-76-6656,TCGA-76-6657,TCGA-76-6661,TCGA-76-6662,TCGA-76-6663,TCGA-76-6664 |
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(Download requires the NBIA Data Retriever and permission) | |
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title | Detailed Description |
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| Detailed Description
Collection | Radiology Imaging Statistics | Number of Studies | 168* | Number of Series | 1304 | Number of Patients | 167 | Number of Images | 1304 | ModalitiesSeg | SEG | Image Size (GB) | 4 |
*For TCGA-GBM patient TCGA-06-0192, there were 2 studies. |
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title | Citations & Data Usage Policy |
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| Citations & Data Usage Policy Tcia limited license policy |
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Info |
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| Beers, A., Gerstner, E., Rosen, B., Clunie, D., Pieper, S., Fedorov, A., & Kalpathy-Cramer, J. (2018). DICOM-SEG Conversions for TCGA-LGG and TCGA-GBM Segmentation Datasets [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.2018.ow6ce3ml |
Info |
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title | Publication Citation |
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| Bakas, S., Akbari, H., Sotiras, A., Bilello, M., Rozycki, M., Kirby, J. S., Freymann, J. B., Farahani, K., & Davatzikos, C. (2017). Advancing The Cancer Genome Atlas glioma MRI collections with expert segmentation labels and radiomic features. Scientific Data, 4(1). https://doi.org/10.1038/sdata.2017.117 https://www.nature.com/articles/sdata2017117 |
Info |
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| Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F. (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository. Journal of Digital Imaging, 26(6), 1045–1057. https://doi.org/10.1007/s10278-013-9622-7 |
Bakas, S., Akbari, H., Sotiras, A., Bilello, M., Rozycki, M., Kirby, J. S., Freymann, J. B., Farahani, K., & Davatzikos, C. (2017). Advancing The Cancer Genome Atlas glioma MRI collections with expert segmentation labels and radiomic features. Scientific Data, 4(1). httpsIn addition to the dataset citation above, please be sure to cite the following if you utilize these data in your research: Info |
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| title | Publication Citation |
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| : //doi.org/10.1038/sdata.2017.117 https://www.nature.com/articles/sdata2017117
Info |
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| Bakas, S., Akbari, H., Sotiras, A., Bilello, M., Rozycki, M., Kirby, J., Freymann, J., Farahani, K., & Davatzikos, C. (2017). Segmentation Labels for the Pre-operative Scans of the TCGA-LGG collection [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/K9/TCIA.2017.GJQ7R0EF |
Info |
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| Bakas, S., Akbari, H., Sotiras, A., Bilello, M., Rozycki, M., Kirby, J., Freymann, J., Farahani, K., & Davatzikos, C. (2017). Segmentation Labels for the Pre-operative Scans of the TCGA-GBM collection [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/K9/TCIA.2017.KLXWJJ1Q |
Other Publications Using This DataTCIA maintains a list of publications that leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA's Helpdesk.
Localtab |
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| Version 1 (Current): 2020/04/30Data Type | Download all or Query/Filter | License |
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Segmentations (DICOM, 4 GB) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/41517733/TCGA-GBM%20MR%20Images%20DICOM%20Seg%20Conversions%20NBIA-manifest%20April%202020.tcia?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?CollectionCriteria=TCGA-GBM,TCGA-LGG?text-search=ow6ce3ml |
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(Download requires the NBIA Data Retriever and permission) | | DCMQI Metadata (JSON , TXT, ZIP, 3.1 MB) |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/41517733/TCGA_Segmentation%20DCMQI%20Metadata.zip?api=v2 |
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| | TCGA key mapping (CSV) | | LGG images - button-generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/41517733/TCGA_DSO_Key.csv?api=v2 |
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| | Corresponding Original MR Images from TCGA-LGG images 65 subjects (DICOM, MR, 17 GB | ) | ) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/41517733/doiJNLP-JAMS4RFq.tcia?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?ImageModalityCriteria=MR&MinNumberOfStudiesCriteria=1&PatientCriteria=TCGA-CS-4942,TCGA-CS-4944,TCGA-CS-5393,TCGA-CS-5396,TCGA-CS-5397,TCGA-CS-6186,TCGA-CS-6188,TCGA-CS-6665,TCGA-CS-6666,TCGA-CS-6668,TCGA-CS-6669,TCGA-DU-5851,TCGA-DU-5854,TCGA-DU-5855,TCGA-DU-5872,TCGA-DU-5874,TCGA-DU-6404,TCGA-DU-6542,TCGA-DU-7008,TCGA-DU-7010,TCGA-DU-7014,TCGA-DU-7015,TCGA-DU-7018,TCGA-DU-7019,TCGA-DU-7294,TCGA-DU-7298,TCGA-DU-7299,TCGA-DU-7300,TCGA-DU-7301,TCGA-DU-7302,TCGA-DU-7304,TCGA-DU-7306,TCGA-DU-7309,TCGA-DU-8162,TCGA-DU-8164,TCGA-DU-8166,TCGA-DU-8167,TCGA-DU-8168,TCGA-DU-A5TR,TCGA-DU-A5TS,TCGA-DU-A5TT,TCGA-DU-A5TU,TCGA-DU-A5TW,TCGA-DU-A5TY,TCGA-DU-A6S7,TCGA-DU-A6S8,TCGA-FG-5964,TCGA-FG-6689,TCGA-FG-6691,TCGA-FG-6692,TCGA-FG-7634,TCGA-FG-A4MT,TCGA-HT-7473,TCGA-HT-7602,TCGA-HT-7680,TCGA-HT-7686,TCGA-HT-7690,TCGA-HT-7694,TCGA-HT-7879,TCGA-HT-7884,TCGA-HT-8018,TCGA-HT-8111,TCGA-HT-8114,TCGA-HT-8563,TCGA-HT-A61A |
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(Download requires the NBIA Data Retriever and permission) | | Corresponding Original MR Images from TCGA-GBM images 102 subjects (DICOM, MR, 32 GB) |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/41517733/doiJNLP-QoOaKUdn.tcia?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?ImageModalityCriteria=MR&MinNumberOfStudiesCriteria=1&PatientCriteria=TCGA-02-0006,TCGA-02-0009,TCGA-02-0011,TCGA-02-0027,TCGA-02-0033,TCGA-02-0034,TCGA-02-0037,TCGA-02-0046,TCGA-02-0047,TCGA-02-0054,TCGA-02-0059,TCGA-02-0064,TCGA-02-0068,TCGA-02-0069,TCGA-02-0070,TCGA-02-0075,TCGA-02-0085,TCGA-02-0086,TCGA-02-0087,TCGA-02-0102,TCGA-02-0106,TCGA-02-0116,TCGA-06-0119,TCGA-06-0122,TCGA-06-0130,TCGA-06-0137,TCGA-06-0138,TCGA-06-0139,TCGA-06-0142,TCGA-06-0145,TCGA-06-0149,TCGA-06-0154,TCGA-06-0158,TCGA-06-0162,TCGA-06-0164,TCGA-06-0176,TCGA-06-0177,TCGA-06-0179,TCGA-06-0182,TCGA-06-0184,TCGA-06-0185,TCGA-06-0187,TCGA-06-0188,TCGA-06-0190,TCGA-06-0192,TCGA-06-0238,TCGA-06-0240,TCGA-06-0644,TCGA-06-0646,TCGA-06-1084,TCGA-06-1802,TCGA-06-2570,TCGA-06-5408,TCGA-06-5413,TCGA-06-5417,TCGA-06-6389,TCGA-08-0355,TCGA-08-0356,TCGA-08-0359,TCGA-08-0360,TCGA-08-0385,TCGA-08-0389,TCGA-08-0390,TCGA-08-0392,TCGA-08-0509,TCGA-08-0512,TCGA-08-0520,TCGA-08-0522,TCGA-12-0616,TCGA-12-0776,TCGA-12-0829,TCGA-12-1094,TCGA-12-1098,TCGA-12-1598,TCGA-12-1601,TCGA-12-3650,TCGA-14-1456,TCGA-14-1794,TCGA-14-1825,TCGA-14-3477,TCGA-19-0963,TCGA-19-1789,TCGA-19-2624,TCGA-19-2631,TCGA-19-5951,TCGA-19-5954,TCGA-19-5958,TCGA-19-5960,TCGA-76-4932,TCGA-76-4934,TCGA-76-4935,TCGA-76-6191,TCGA-76-6193,TCGA-76-6280,TCGA-76-6282,TCGA-76-6285,TCGA-76-6656,TCGA-76-6657,TCGA-76-6661,TCGA-76-6662,TCGA-76-6663,TCGA-76-6664 |
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(Download requires the NBIA Data Retriever and permission) | |
TCGA-GBM images - 102 subjects (DICOM, 32 GB) | | Segmentations - (DICOM, 4 GB) | | DCMQI Metadata (ZIP, 3.1 MB) | | TCGA key mapping (CSV) | Image Removed
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