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  • DICOM SR of clinical data and measurement for breast cancer collections to TCIA (DICOM-SR-Breast-Clinical)

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Description

The Data Integration & Imaging Informatics (DI-Cubed) project explored the issue of lack of standardized data capture at the point of data creation, as reflected in the non-image data accompanying various TCIA breast cancer collections. The work addressed the desire for semantic interoperability between various NCI initiatives by aligning on common clinical metadata elements and supporting use cases that connect clinical, imaging, and genomics data. Accordingly, clinical and measurement data was imported into I2B2 and cross-mapped to industry standard concepts for names and values including those derived from BRIDG, CDISC SDTM, DICOM Structured Reporting models and using NCI Thesaurus, SNOMED CT and LOINC controlled terminology.

...

During the project, various deficiencies in the DICOM Breast Imaging Report template were identified with respect to describing breast MR studies, laterality of findings versus procedures, more recently developed receptor types, and patient characteristics and status. These were addressed via DICOM CP 1838, finalized in Jan 2019, and this subset reflects those changes.

1. DICOM Breast Imaging Report Templates . Available available from: http://dicom.nema.org/medical/dicom/current/output/chtml/part16/sect_BreastImagingReportTemplates.html

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Localtab Group



Image RemovedImage Removed
Localtab
activetrue
titleData Access

Data Access

Click the Download button to save a ".tcia" manifest file to your computer, which you must open with the NBIA Data RetrieverPlease see the Detailed Description tab for related imaging, Search, & Download manifests.


Data TypeDownload all or Query/Filter
Images (DICOM, X.X GB)

Image RemovedImage Removed

TCGA Clinical Data (??, X.X GB)
License

Combined SR across 4 collections (DICOM, 1292 files, 10.0 MB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/50135479/SR_wgllssg1.tcia?api=v2

Download all SR across 4 source collections


Tcia button generator
labelSearch
urlhttps://nbia.cancerimagingarchive.net/nbia-search/?ImageModalityCriteria=SR&MinNumberOfStudiesCriteria=1&CollectionCriteria=BREAST-DIAGNOSIS,Breast-MRI-NACT-Pilot,ISPY1,TCGA-BRCA&ThirdPartyCriteria=YES

Search reports in Radiology Portal


(Download requires NBIA Data Retriever)

Tcia cc by 3

SR for TCGA-BRCA (DICOM, 164 files, 1.2MB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/50135479/TCGA-BRCA_SR.tcia?api=v2

Download TCGA-BRCA clinical SR


(Download requires NBIA Data Retriever)

Tcia cc by 3

SR for ISPY1 (DICOM, 845 files , 6.6MB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/50135479/ISPY1_SR.tcia?api=v2

Download ISPY1 SR


(Download requires NBIA Data Retriever)

Tcia cc by 3

SR for BREAST-DIAGNOSIS (DICOM, 94 files, 750KB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/50135479/BREAST-DIAGNOSIS_SR.tcia?api=v2

Download BREAST-DIAGNOSIS SR


(Download requires NBIA Data Retriever)

Tcia cc by 3

SR for Breast-MRI-NACT-Pilot (DICOM, 189 files, 1.4MB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/50135479/Breast-MRI-NACT-Pilot_SR.tcia?api=v2

Download Breast-MRI-NACT-Pilot SR


(Download requires NBIA Data Retriever)

Tcia cc by 3


Please contact help@cancerimagingarchive.net  with any questions regarding usage.

Collections Used in this Third Party Analysis

Below is a list of the Collections used in these analyses:

Source Data TypeDownload or SearchLicense
TCGA-BRCA Images (DICOM, 88.1GB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/3539225/TCIA_TCGA-BRCA_09-16-2015.tcia?version=1&modificationDate=1534787408445&api=v2



Tcia button generator
labelSearch
urlhttps://www.cancerimagingarchive.net/nbia-search/?CollectionCriteria=TCGA-BRCA



(Download requires NBIA Data Retriever)

Tcia cc by 3

BREAST-DIAGNOSIS Images (DICOM, 60.8GB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/2621477/TCIA_BREAST-DIAGNOSIS_06-22-2015.tcia?api=v2



Tcia button generator
labelSearch
urlhttps://www.cancerimagingarchive.net/nbia-search/?CollectionCriteria=BREAST-DIAGNOSIS



(Download requires NBIA Data Retriever)

Tcia cc by 3

ISPY1 Images and Segmentations (DICOM, 76.2GB)



Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/20643859/doiJNLP-ISPY1-full-09-26-2016.tcia?version=1&modificationDate=1534787010468&api=v2



Tcia button generator
labelSearch
urlhttps://www.cancerimagingarchive.net/nbia-search/?CollectionCriteria=ISPY1


(Download requires NBIA Data Retriever)


Tcia cc by 3
Breast-MRI-NACT-Pilot Images and Segmentations (DICOM, 19.5 GB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/22513764/doiJNLP-J4OtCtbF.tcia?version=1&modificationDate=1534787445626&api=v2



Tcia button generator
labelSearch
urlhttps://www.cancerimagingarchive.net/nbia-search/?CollectionCriteria=BREAST-MRI-NACT-Pilot


(Download requires NBIA Data Retriever)

Tcia cc by 3





Localtab
titleDetailed Description

Detailed Description

Coming soon


Radiology Image Statistics

Modalities

SR

Number of Participants

474

Number of Studies

1,286

Number of Series

1,292

Number of Images

1,292
Image Size10 MB

 You can download all results at once through (Combined SR across 4 collections (DICOM, 1292 files, 10.0 Mb) (note, no pixel data in SR)) or in chunks:

  • SR for TCGA-BRCA - 164 files 1.2Mb
  • SR for ISPY1 - 845 files , 6.6Mb
  • SR for BREAST-DIAGNOSIS - 94 files, 750kB
  • SR for Breast-MRI-NACT-Pilot - 189 files, 1.4Mb





Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy 

These collections are freely available to browse, download, and use for commercial, scientific and educational purposes as outlined in the Creative Commons Attribution 3.0 Unported License. Questions may be directed to help@cancerimagingarchive.net. Please be sure to acknowledge both this data set and TCIA in publications by including the following citations in your work:

 

Tcia limited license policy

Info
titleData Citation

Clunie D.,  Hickman H.,  Ver Hoef W.,  Hastak S.,  Wagner U.,  Helton E. (2019).  DICOM SR of clinical data and measurement for breast cancer collections to TCIA [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.2019.wgllssg1


Info
titlePublication citation

Clunie, D., Hickman, H., Ver Hoef, W., Hastak, S., Evans, J., Neville, J., & Wagner, U. (2020). Observations from the Data Integration and Imaging Informatics (DI-Cubed) Project. MDPI AG. https://doi.org/10.20944/preprints202008.0474.v1


Info
titleTCIA Citation

Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. (paper)

In addition to the dataset citation above, please be sure to cite the following if you utilize these data in your research:

Info
titlePublication Citation

coming soon

DOI; https://doi.org/10.1007/s10278-013-9622-7

Other Publications Using This Data

TCIA maintains a list of publications that leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk.




Image RemovedImage Removed
Localtab
titleVersions

Version 1 (Current):

2019

Updated 2020/

02

05/

19

26

Data TypeDownload all or Query/Filter
Images
License

Combined SR across 4 collections (DICOM,

X.X GB)

Image RemovedImage Removed

TCGA Clinical Data (??, X.X GB)

1292 files, 10.0 MB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/50135479/SR_wgllssg1.tcia?api=v2

Download all SR across 4 source collections


Tcia button generator
labelSearch
urlhttps://nbia.cancerimagingarchive.net/nbia-search/?ImageModalityCriteria=SR&MinNumberOfStudiesCriteria=1&CollectionCriteria=BREAST-DIAGNOSIS,Breast-MRI-NACT-Pilot,ISPY1,TCGA-BRCA&ThirdPartyCriteria=YES

Search reports in Radiology Portal


(Download requires NBIA Data Retriever)

Tcia cc by 3

SR for TCGA-BRCA (DICOM, 164 files, 1.2MB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/50135479/TCGA-BRCA_SR.tcia?api=v2

Download TCGA-BRCA clinical SR


(Download requires NBIA Data Retriever)

Tcia cc by 3

SR for ISPY1 (DICOM, 845 files , 6.6MB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/50135479/ISPY1_SR.tcia?api=v2

Download ISPY1 SR


(Download requires NBIA Data Retriever)

Tcia cc by 3

SR for BREAST-DIAGNOSIS (DICOM, 94 files, 750KB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/50135479/BREAST-DIAGNOSIS_SR.tcia?api=v2

Download BREAST-DIAGNOSIS SR


(Download requires NBIA Data Retriever)

Tcia cc by 3

SR for Breast-MRI-NACT-Pilot (DICOM, 189 files, 1.4MB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/50135479/Breast-MRI-NACT-Pilot_SR.tcia?api=v2

Download Breast-MRI-NACT-Pilot SR


(Download requires NBIA Data Retriever)

Tcia cc by 3