Authors
Nicholas Bloch, Mirabela Rusu, Geert Litjens, Henkjan Huisman, ? Futterer?, Anant Madabhushi, John Freymann, Justin Kirby, Michael Grauer, Andinet Enquobahrie, Larry Clarke, Carl Jaffe, Keyvan Farahani
Citation
Description
This data set was created for use
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in the NCI-ISBI 2013 Challenge - Automated Segmentation of Prostate Structures. The challenge data set was divided into 3 parts including training, leaderboard and test data sets. This allowed participants to prepare their algorithms and test their results prior to submitting to a final test phase for selecting the winner.
Image data were selected
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from PROSTATE-DIAGNOSIS
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and Prostate-3T collections on TCIA. Cases consist of axial scans with half obtained at 1.5 T (Philips Achieva) with an endo-rectal receiver coil (fromBostonMedicalCenter) and the other half at 3T (Siemens TIM) with a surface coil (from Radboud University Nijmegen Medical Centre [RUNMC],Netherlands). They were acquired as T2-weighted MR axial pulse sequences with either 4 mm thick slices at 3T or 3 mm thick at 1.5T. Each file contains nearly all DICOM acquisition parameters except tags that specifically identify Private Health Information.
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Each case has had central gland (CG) and peripheral zone (PZ) outlines marked by Drs. Nicolas Bloch (Boston University School of Medicine) and Mirabela Rusu (Case Western University) or Drs. Henkjan Huisman, Geert Litjens, or Jurgen Futterer at RUNMC Netherlands.
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| title | Data Access |
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| Data Access
| Data Type | Download all or Query/Filter | License |
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| NCI Challenge Data - Training (zip, NRRD, 280 kb, 60 subjects) | | Tcia button generator |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/21267207/NCI-ISBI%202013%20Prostate%20Challenge%20-%20Training.zip?api=v2 |
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| | | NCI Challenge Data - Leaderboard (zip, NRRD, 59 kb, 10 subjects) | | Tcia button generator |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/21267207/NCI-ISBI%202013%20Prostate%20Challenge%20-%20Leaderboard.zip?api=v2 |
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| | | NCI Challenge Data - Test (zip, NRRD, 53 kb, 10 subjects) | | Tcia button generator |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/21267207/NCI-ISBI%202013%20Prostate%20Challenge%20-%20Test.zip?api=v2 |
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Please contact help@cancerimagingarchive.net with any questions regarding usage. Collections Used in this Third Party Analysis
Below is a list of the Collections used in these analyses: | Source Data Type | Download all or Query/Filter | License |
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| Source Image Data - Training (DICOM, 60 subjects, 60 studies, 60 series, 1555 images , 416 MB) |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/21267207/ISBI-Prostate-Challenge-Training.tcia?api=v2 |
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| | | Source Image Data - Leaderboard (DICOM, 10 subjects, 10 studies, 10 series, 261 images , 85 MB) |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/21267207/ISBI-Prostate-Challenge-LeaderBoard.tcia?api=v2 |
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| | | Source Image Data - Test (DICOM, 10 subjects, 10 studies, 10 series, 271 images , 81 MB ) |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/21267207/ISBI-Prostate-Challenge-Testing.tcia?api=v2 |
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| title | Detailed Description |
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| Detailed Description
Training Data can be further split by source Collection: |
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| title | Citations & Data Usage Policy |
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| Citations & Data Usage Policy | Public collection license |
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| Tcia limited license policy |
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| Info |
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| Bloch N, Madabhushi A, Huisman H, Freymann J, Kirby J, Grauer M, Enquobahrie A, Jaffe C, Clarke L, Farahani K. (2015). NCI-ISBI 2013 Challenge: Automated Segmentation of Prostate Structures. The Cancer Imaging Archive. http://doi.org/10.7937/K9/TCIA.2015.zF0vlOPv |
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| Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. (2013) The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, pp 1045-1057. DOI: https://doi.org/10.1007/s10278-013-9622-7 |
Other Publications Using This DataTCIA maintains a list of publications that leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk. |
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| Version 1 (Current): 2015/08/20| Data Type | Download all or Query/Filter | License |
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| Image Data - Training (DICOM, 60 subjects) |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/21267207/ISBI-Prostate-Challenge-Training.tcia?api=v2 |
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| | | Image Data - Leaderboard (DICOM, 10 subjects) |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/21267207/ISBI-Prostate-Challenge-LeaderBoard.tcia?api=v2 |
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| | | Image Data - Test (DICOM, 10 subjects) |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/21267207/ISBI-Prostate-Challenge-Testing.tcia?api=v2 |
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| | | NCI Challenge Data - Training (NRRD, 60 subjects) |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/21267207/NCI-ISBI%202013%20Prostate%20Challenge%20-%20Training.zip?api=v2 |
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| | | NCI Challenge Data - Leaderboard (NRRD, 10 subjects) |
| Tcia button generator |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/21267207/NCI-ISBI%202013%20Prostate%20Challenge%20-%20Leaderboard.zip?api=v2 |
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| | | NCI Challenge Data - Test (NRRD, 10 subjects) |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/21267207/NCI-ISBI%202013%20Prostate%20Challenge%20-%20Test.zip?api=v2 |
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Dataset Download
Image Data — Save/open this links below to initiate our Java Web Start download manager to begin your download
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| Training | 60 subjects, DICOM prostate MRI |
| Leaderboard | 10 subjects, DICOM prostate MRI |
| Test | 10 subjects, DICOM prostate MRI |
Segmentation Data
Source Shared List
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