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  • DICOM SR of clinical data and measurement for breast cancer collections to TCIA (DICOM-SR-Breast-Clinical)

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Description

The Data Integration & Imaging Informatics (DI-Cubed) project explored the issue of lack of standardized data capture at the point of data creation, as reflected in the non-image data accompanying various TCIA breast cancer collections. The work addressed the desire for semantic interoperability between various NCI initiatives by aligning on common clinical metadata elements and supporting use cases that connect clinical, imaging, and genomics data. Accordingly, clinical and measurement data was imported into I2B2 and cross-mapped to industry standard concepts for names and values including those derived from BRIDG, CDISC SDTM, DICOM Structured Reporting models and using NCI Thesaurus, SNOMED CT and LOINC controlled terminology.

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Localtab Group



Localtab
activetrue
titleData Access

Data Access

Please see the Detailed Description tab for related imaging, Search, & Download manifests.


Data TypeDownload all or Query/FilterLicense

Combined SR across 4 collections (DICOM, 1292 files, 10.0

Mb)

(note, no pixel data in SR)

Image RemovedImage Removed

MB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/50135479/SR_wgllssg1.tcia?api=v2

Download all SR across 4 source collections


Tcia button generator
labelSearch
urlhttps://nbia.cancerimagingarchive.net/nbia-search/?ImageModalityCriteria=SR&MinNumberOfStudiesCriteria=1&CollectionCriteria=BREAST-DIAGNOSIS,Breast-MRI-NACT-Pilot,ISPY1,TCGA-BRCA&ThirdPartyCriteria=YES

Search reports in Radiology Portal


(Download requires NBIA Data Retriever)

Tcia cc by 3

Click the Download button to save a ".tcia" manifest file to your computer, which you must open with the NBIA Data Retriever

SR for TCGA-BRCA

-

(DICOM, 164 files, 1.

2Mb

2MB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/50135479/TCGA-BRCA_SR.tcia?api=v2
SR for ISPY-1 -

Download TCGA-BRCA clinical SR


(Download requires NBIA Data Retriever)

Tcia cc by 3

SR for ISPY1 (DICOM, 845 files , 6.

6Mb

6MB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/50135479/ISPY1_SR.tcia?api=v2

Download ISPY1 SR


(Download requires NBIA Data Retriever)

tcia-cc-by-3

SR for BREAST-DIAGNOSIS

-

(DICOM, 94 files,

750kB

750KB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/50135479/BREAST-DIAGNOSIS_SR.tcia?api=v2

Download BREAST-DIAGNOSIS SR


(Download requires NBIA Data Retriever)

tcia-cc-by-3

SR for Breast-MRI-NACT-
PILOT -
Pilot (DICOM, 189 files, 1.
4Mb
4MB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/50135479/Breast-MRI-NACT-Pilot_SR.tcia?api=v2

Download Breast-MRI-NACT-Pilot SR


(Download requires NBIA Data Retriever)

Tcia cc by 3


Please contact help@cancerimagingarchive.net  with any questions regarding usage.

Collections Used in this Third Party Analysis

Below is a list of the Collections used in these analyses:

Source Data TypeDownload or SearchLicense
TCGA-BRCA Images (DICOM, 88.1GB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/3539225/TCIA_TCGA-BRCA_09-16-2015.tcia?version=1&modificationDate=1534787408445&api=v2



Tcia button generator
labelSearch
urlhttps://www.cancerimagingarchive.net/nbia-search/?CollectionCriteria=TCGA-BRCA



(Download requires NBIA Data Retriever)

Tcia cc by 3

BREAST-DIAGNOSIS Images (DICOM, 60.8GB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/2621477/TCIA_BREAST-DIAGNOSIS_06-22-2015.tcia?api=v2



Tcia button generator
labelSearch
urlhttps://www.cancerimagingarchive.net/nbia-search/?CollectionCriteria=BREAST-DIAGNOSIS



(Download requires NBIA Data Retriever)

Tcia cc by 3

ISPY1 Images and Segmentations (DICOM, 76.2GB)



Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/20643859/doiJNLP-ISPY1-full-09-26-2016.tcia?version=1&modificationDate=1534787010468&api=v2



Tcia button generator
labelSearch
urlhttps://www.cancerimagingarchive.net/nbia-search/?CollectionCriteria=ISPY1


(Download requires NBIA Data Retriever)


Tcia cc by 3
Breast-MRI-NACT-Pilot Images and Segmentations (DICOM, 19.5 GB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/22513764/doiJNLP-J4OtCtbF.tcia?version=1&modificationDate=1534787445626&api=v2



Tcia button generator
labelSearch
urlhttps://www.cancerimagingarchive.net/nbia-search/?CollectionCriteria=BREAST-MRI-NACT-Pilot


(Download requires NBIA Data Retriever)

Tcia cc by 3





  • Breast-MRI-NACT
-PILOTImage Removed
  • -Pilot - 189 files, 1.4Mb


Localtab
titleDetailed Description

Detailed Description

TCIA imaging source files for these SR:


Radiology Image Statistics

Modalities

SR

Number of Participants

474

Number of Studies

1,286

Number of Series

1,292

Number of Images

1,292
Image Size10 MB

 You can download all results at once through (Combined SR across 4 collections (DICOM, 1292 files, 10.0 Mb) (note, no pixel data in SR)) or in chunks:

  • SR for TCGA-BRCA - 164 files 1.2Mb
  • SR for ISPY1 - 845 files , 6.6Mb
  • SR for BREAST-DIAGNOSIS - 94 files, 750kB
  • SR for
CollectionDownload or Query/Filter

TCGA-BRCA

Image Removed

ISPY1

Image Removed

BREAST-DIAGNOSIS

Image Removed




Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy 

These collections are freely available to browse, download, and use for commercial, scientific and educational purposes as outlined in the Creative Commons Attribution 3.0 Unported License. Questions may be directed to help@cancerimagingarchive.net. Please be sure to acknowledge both this data set and TCIA in publications by including the following citations in your work:

 

Tcia limited license policy

Info
titleData Citation

Clunie D.,  Hickman H.,  Ver Hoef W.,  Hastak S.,  Wagner U.,  Helton E. (2019).  DICOM SR of clinical data and measurement for breast cancer collections to TCIA [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.2019.wgllssg1


Info
titlePublication citation

Clunie, D., Hickman, H., Ver Hoef, W., Hastak, S., Evans, J., Neville, J., & Wagner, U. (2020). Observations from the Data Integration and Imaging Informatics (DI-Cubed) Project. MDPI AG. https://doi.org/10.20944/preprints202008.0474.v1


Info
titleTCIA Citation

Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI; https://doi.org/10.1007/s10278-013-9622-7

In addition to the dataset citation above, please be sure to cite the following if you utilize these data in your research:

Info
titlePublication Citation

coming soon

Other Publications Using This Data

TCIA maintains a list of publications that leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk.




Localtab
titleVersions

Version 1 (Current): Updated 2020/05/26

Data TypeDownload all or Query/FilterLicense

Combined SR across 4 collections (DICOM, 1292 files, 10.0

Mb)

(note, no pixel data in SR)

Image RemovedImage Removed

Click the Download button to save a ".tcia" manifest file to your computer, which you must open with the NBIA Data Retriever

SR for TCGA-BRCA - 164 files 1.2Mb

Image Removed

SR for ISPY-1 - 845 files , 6.6Mb

Image Removed

MB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/50135479/SR_wgllssg1.tcia?api=v2

Download all SR across 4 source collections


Tcia button generator
labelSearch
urlhttps://nbia.cancerimagingarchive.net/nbia-search/?ImageModalityCriteria=SR&MinNumberOfStudiesCriteria=1&CollectionCriteria=BREAST-DIAGNOSIS,Breast-MRI-NACT-Pilot,ISPY1,TCGA-BRCA&ThirdPartyCriteria=YES

Search reports in Radiology Portal


(Download requires NBIA Data Retriever)

Tcia cc by 3

SR for TCGA-BRCA (DICOM, 164 files, 1.2MB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/50135479/TCGA-BRCA_SR.tcia?api=v2

Download TCGA-BRCA clinical SR


(Download requires NBIA Data Retriever)

Tcia cc by 3

SR for ISPY1 (DICOM, 845 files , 6.6MB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/50135479/ISPY1_SR.tcia?api=v2

Download ISPY1 SR


(Download requires NBIA Data Retriever)

Tcia cc by 3

SR for BREAST-DIAGNOSIS (DICOM, 94 files, 750KB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/50135479/BREAST-DIAGNOSIS_SR.tcia?api=v2

Download BREAST-DIAGNOSIS SR


(Download requires NBIA Data Retriever)

Tcia cc by 3

SR for BREAST-DIAGNOSIS - 94 files, 750kB

SR for Breast-MRI-NACT-
PILOT -
Pilot (DICOM, 189 files, 1.
4Mb
4MB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/50135479/Breast-MRI-NACT-Pilot_SR.tcia?api=v2

Download Breast-MRI-NACT-Pilot SR


(Download requires NBIA Data Retriever)

Tcia cc by 3

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