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Description

The Data Integration & Imaging Informatics (DI-Cubed) project explored the issue of lack of standardized data capture at the point of data creation, as reflected in the non-image data accompanying various TCIA breast cancer collections. The work addressed the desire for semantic interoperability between various NCI initiatives by aligning on common clinical metadata elements and supporting use cases that connect clinical, imaging, and genomics data. Accordingly, clinical and measurement data was imported into I2B2 and cross-mapped to industry standard concepts for names and values including those derived from BRIDG, CDISC SDTM, DICOM Structured Reporting models and using NCI Thesaurus, SNOMED CT and LOINC controlled terminology.

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Detailed Description

TCIA imaging source files for these SR. You can explore further with the "3rd-Party Analysis Results" radio button options at the lower left of the Search screen.

Localtab Group

Localtab

active	true
title	Data Access

Data Access

Please see the Detailed Description tab for related imaging, Search, & Download manifests.

Data Type	Download all or Query/Filter	License
Combined SR across 4 collections (DICOM, 1292 files, 10.0

Mb)

(note, no pixel data in SR)

Image Removed Image Removed

MB)

Tcia button generator

url	https://wiki.cancerimagingarchive.net/download/attachments/50135479/SR_wgllssg1.tcia?api=v2

Download all SR across 4 source collections

Tcia button generator

label	Search
url	https://nbia.cancerimagingarchive.net/nbia-search/?ImageModalityCriteria=SR&MinNumberOfStudiesCriteria=1&CollectionCriteria=BREAST-DIAGNOSIS,Breast-MRI-NACT-Pilot,ISPY1,TCGA-BRCA&ThirdPartyCriteria=YES

Search reports in Radiology Portal

(Download requires NBIA Data Retriever)

Tcia cc by 3

Click the Download button to save a ".tcia" manifest file to your computer, which you must open with the NBIA Data Retriever

SR for TCGA-BRCA

-

(DICOM, 164 files, 1.

2Mb

Image Removed

SR for ISPY-1 - 845 files , 6.6Mb

2MB)

Tcia button generator

url	https://wiki.cancerimagingarchive.net/download/attachments/50135479/TCGA-BRCA_SR.tcia?api=v2

Download TCGA-BRCA clinical SR

(Download requires NBIA Data Retriever)

Tcia cc by 3

SR for ISPY1 (DICOM, 845 files , 6.6MB)

Tcia button generator

url	https://wiki.cancerimagingarchive.net/download/attachments/50135479/ISPY1_SR.tcia?api=v2

Download ISPY1 SR

(Download requires NBIA Data Retriever)

Tcia cc by 3

Image Removed

SR for BREAST-DIAGNOSIS

-

(DICOM, 94 files,

750kB

750KB)

Tcia button generator

url	https://wiki.cancerimagingarchive.net/download/attachments/50135479/BREAST-DIAGNOSIS_SR.tcia?api=v2

Download BREAST-DIAGNOSIS SR

(Download requires NBIA Data Retriever)

Tcia cc by 3

Image Removed

SR for Breast-MRI-NACT-

PILOT -

Pilot (DICOM, 189 files, 1.

4Mb

4MB)

Tcia button generator

url	https://wiki.cancerimagingarchive.net/download/attachments/50135479/Breast-MRI-NACT-Pilot_SR.tcia?api=v2

Download Breast-MRI-NACT-Pilot SR

(Download requires NBIA Data Retriever)

Tcia cc by 3

Image Removed

Please contact help@cancerimagingarchive.net with any questions regarding usage.

Collections Used in this Third Party Analysis

Below is a list of the Collections used in these analyses:

Source Data Type

Download or Search

License

TCGA-BRCA Images (DICOM, 88.1GB)

Tcia button generator

url	https://wiki.

Localtab

title	Detailed Description

cancerimagingarchive.net/download/attachments/3539225/TCIA_TCGA-BRCA_09-16-2015.tcia?version=1&modificationDate=1534787408445&api=v2

Tcia button generator

label	Search
url	https://www.cancerimagingarchive.net/nbia-search/?CollectionCriteria=TCGA-BRCA

(Download requires NBIA Data Retriever)

Tcia cc by 3

BREAST-DIAGNOSIS Images (DICOM, 60.8GB)

Tcia button generator

url	https://wiki.cancerimagingarchive.net/download/attachments/2621477/TCIA_BREAST-DIAGNOSIS_06-22-2015.tcia?api=v2

Tcia button generator

label	Search
url	https://www.cancerimagingarchive.net/nbia-search/?CollectionCriteria=BREAST-DIAGNOSIS

(Download requires NBIA Data Retriever)

Tcia cc by 3

ISPY1 Images and Segmentations (DICOM, 76.2GB)

Tcia button generator

url	https://wiki.cancerimagingarchive.net/download/attachments/20643859/doiJNLP-ISPY1-full-09-26-2016.tcia?version=1&modificationDate=1534787010468&api=v2

Tcia button generator

label	Search
url	https://www.cancerimagingarchive.net/nbia-search/?CollectionCriteria=ISPY1

(Download requires NBIA Data Retriever)

Tcia cc by 3

Breast-MRI-NACT-Pilot Images and Segmentations (DICOM, 19.5 GB)

Tcia button generator

url	https://wiki.cancerimagingarchive.net/download/attachments/22513764/doiJNLP-J4OtCtbF.tcia?version=1&modificationDate=1534787445626&api=v2

Tcia button generator

label	Search
url	https://www.cancerimagingarchive.net/nbia-search/?CollectionCriteria=BREAST-MRI-NACT-Pilot

(Download requires NBIA Data Retriever)

Tcia cc by 3

Localtab

title	Detailed Description

Detailed Description

	Radiology Image Statistics
Modalities	SR
Number of Participants	474
Number of Studies	1,286
Number of Series	1,292
Number of Images	1,292
Image Size	10 MB

You can download all results at once through (Combined SR across 4 collections (DICOM, 1292 files, 10.0 Mb) (note, no pixel data in SR)) or in chunks:

SR for TCGA-BRCA - 164 files 1.2Mb
SR for ISPY1 - 845 files , 6.6Mb
SR for BREAST-DIAGNOSIS - 94 files, 750kB
SR for Breast-MRI-NACT-Pilot - 189 files, 1.4Mb

Collection

Download or Query/Filter

TCGA-BRCA

Image Removed

ISPY1

Image Removed

BREAST-DIAGNOSIS

Image Removed

Breast-MRI-NACT-PILOT

Image Removed

Localtab

title	Citations & Data Usage Policy

Citations & Data Usage Policy

These collections are freely available to browse, download, and use for commercial, scientific and educational purposes as outlined in the Creative Commons Attribution 3.0 Unported License. Questions may be directed to help@cancerimagingarchive.net. Please be sure to acknowledge both this data set and TCIA in publications by including the following citations in your work:

Tcia limited license policy
Info
title Data Citation
Clunie D., Hickman H., Ver Hoef W., Hastak S., Wagner U., Helton E. (2019). DICOM SR of clinical data and measurement for breast cancer collections to TCIA [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.2019.wgllssg1

Info
title Publication citation
Clunie, D., Hickman, H., Ver Hoef, W., Hastak, S., Evans, J., Neville, J., & Wagner, U. (2020). Observations from the Data Integration and Imaging Informatics (DI-Cubed) Project. MDPI AG. https://doi.org/10.20944/preprints202008.0474.v1

Info
title TCIA Citation
Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI; https://doi.org/10.1007/s10278-013-9622-7
In addition to the dataset citation above, please be sure to cite the following if you utilize these data in your research:
title
Info
Publication Citation
coming soon

Other Publications Using This Data

TCIA maintains a list of publications that leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk.

Localtab

title	Versions

Version 1 (Current): Updated 2020/05/26

Data Type	Download all or Query/Filter	License
Combined SR across 4 collections (DICOM, 1292 files, 10.0

Mb)

(note, no pixel data in SR)

Image Removed Image Removed

MB)

Tcia button generator

url	https://wiki.cancerimagingarchive.net/download/attachments/50135479/SR_wgllssg1.tcia?api=v2

Download all SR across 4 source collections

Tcia button generator

label	Search
url	https://nbia.cancerimagingarchive.net/nbia-search/?ImageModalityCriteria=SR&MinNumberOfStudiesCriteria=1&CollectionCriteria=BREAST-DIAGNOSIS,Breast-MRI-NACT-Pilot,ISPY1,TCGA-BRCA&ThirdPartyCriteria=YES

Search reports in Radiology Portal

(Download requires NBIA Data Retriever)

Tcia cc by 3

Click the Download button to save a ".tcia" manifest file to your computer, which you must open with the NBIA Data Retriever

SR for TCGA-BRCA

-

(DICOM, 164 files, 1.

2Mb

Image Removed

SR for ISPY-1 - 845 files , 6.6Mb

2MB)

Tcia button generator

url	https://wiki.cancerimagingarchive.net/download/attachments/50135479/TCGA-BRCA_SR.tcia?api=v2

Download TCGA-BRCA clinical SR

(Download requires NBIA Data Retriever)

Tcia cc by 3

SR for ISPY1 (DICOM, 845 files , 6.6MB)

Tcia button generator

url	https://wiki.cancerimagingarchive.net/download/attachments/50135479/ISPY1_SR.tcia?api=v2

Download ISPY1 SR

(Download requires NBIA Data Retriever)

Tcia cc by 3

Image Removed

SR for BREAST-DIAGNOSIS

-

(DICOM, 94 files,

750kB

750KB)

Tcia button generator

url	https://wiki.cancerimagingarchive.net/download/attachments/50135479/BREAST-DIAGNOSIS_SR.tcia?api=v2

Download BREAST-DIAGNOSIS SR

(Download requires NBIA Data Retriever)

Tcia cc by 3

Image Removed

SR for Breast-MRI-NACT-

PILOT -

Pilot (DICOM, 189 files, 1

.4Mb

.4MB)

Tcia button generator

url	https://wiki.cancerimagingarchive.net/download/attachments/50135479/Breast-MRI-NACT-Pilot_SR.tcia?api=v2

Download Breast-MRI-NACT-Pilot SR

(Download requires NBIA Data Retriever)

Tcia cc by 3

Image Removed

Child pages

Versions Compared

Old Version 8

New Version Current

Key

Description

Detailed Description

Data Access

Collections Used in this Third Party Analysis

Detailed Description

Citations & Data Usage Policy

Other Publications Using This Data

Version 1 (Current): Updated 2020/05/26