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  • TCGA Breast Phenotype Research Group Data sets (TCGA-Breast-Radiogenomics)

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titlePublication Citation
  • Guo W, Li H, Zhu Y, Lan L, Yang S, Drukker K, Morris E, Burnside E, Whitman G, Giger ML*, Ji Y*:  Prediction of clinical phenotypes in invasive breast carcinomas from the integration of radiomics and genomics data.  J Medical Imaging 2(4), 041007 (Oct-Dec 2015).
  • Burnside E, Drukker K, Li H, Bonaccio E, Zuley M, Ganott M, Net JM, Sutton E, Brandt K, Whitman G, Conzen S, Lan L, Ji Y, Zhu Y, Jaffe C, Huang E, Freymann J, Kirby J, Morris EA*, Giger ML*:  Using computer-extracted image phenotypes from tumors on breast MRI to predict breast cancer pathologic stage. Cancer doi: 10.1002/cncr.29791, 2015.
  • Zhu Y, Li H, Guo W, Drukker K, Lan L, Giger ML*, Ji Y*:  Deciphering genomic underpinnings of quantitative MRI-based radiomic phenotypes of invasive breast carcinoma.  Nature – Scientific Reports 5:17787. doi: 10.1038/srep17787, 2015.
  • Li H, Zhu Y, Burnside ES, …. Perou CM, Ji Y*, Giger ML*:  MRI radiomics signatures for predicting the risk of breast cancer recurrence as given by research versions of gene assays of MammaPrint, Oncotype DX, and PAM50.  Radiology DOI: http://dx.doi.org/10.1148/radiol.2016152110, 2016.
  • Li H, Zhu Y, Burnside ES, …. Perou CM, Ji Y, Giger ML:  Quantitative MRI radiomics in the prediction of molecular classifications of breast cancer subtypes in the TCGA/TCIA Dataset. npj Breast Cancer (2016) 2, 16012; doi:10.1038/npjbcancer.2016.12; published online 11 May 2016.

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  • Image Data:  DICOM – Save/open this file to initiate our Java Web Start download manager to begin your download
  • Radiologist Annotations/Markup:  Please contact the TCIA Helpdesk to request access
  • Computer-extracted image phentotypes:  Please contact the TCIA Helpdesk to request access 
  • Multi-gene assays including MammaPrint, Ocotype DX, and PAM50:  Please contact the TCIA Helpdesk to request access
  • TCGA Clinical Data (from TCGA Data Portal, archived in case of subsequent updates made by TCGA):  Please contact the TCIA Helpdesk to request access