Child pages
  • High Resolution Prostate Segmentations for the ProstateX-Challenge

Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

Summary

Example of a high resolution segmentation. The segmentation is smooth in all directions and does not suffer from step artifacts

We created 66 high resolution segmentations for randomly chosen T2-weighted volumes of the SPIE-AAPM-NCI PROSTATEx Challenges. The high resolution segmentations were obtained by considering the three scan directions: for each scan direction (axial, sagittal, coronal), the gland was manually delineated by a medical student, followed by a review and corrections of an expert urologist. These three anisotropic segmentations were fused to one isotropic segmentation by means of shape-based interpolation in the following manner: (1) The signed distance transformation of the three segmentations is computed. (2) The anisotropic distance volumes are transformed into an isotropic high-resolution representation with linear interpolation. (3) By averaging the distances, smoothing and thresholding them at zero, we obtained the fused segmentation. The resulting segmentations were manually verified and corrected further by the expert urologist if necessary. Serving as ground truth for training CNNs, these segmentations have the potential to improve the segmentation accuracy of automated algorithms. By considering not only the axial scans but also sagittal and coronal scan directions, we aimed to have higher fidelity of the segmentations especially at the apex and base regions of the prostate.

The segmentations to standard DICOM representation were created with dcmqi .

Acknowledgements

  • This work has been funded by the EU and the federal state of Saxony-Anhalt, Germany under grant number ZS/2016/08/80388.
Localtab Group



Localtab
activetrue
titleData Access

Data Access

Click the Download  button to save a ".tcia" manifest file to your computer, which you must open with the  NBIA Data Retriever.

Data TypeDownload all or Query/Filter
Segmentations (DICOM, 0.119 GB)

    

Corresponding Original MR Images from PROSTATEx (DICOM, 4kB)

    






Localtab
titleDetailed Description

Detailed Description

Image Statistics
ModalitiesSEG
Number of Patients66
Number of Studies66
Number of Series66

Number of Images

66
Image Size (GB)0.119


Note:   Please contact help@cancerimagingarchive.net  with any questions regarding usage.




Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy 

Public collection license

Info
titleDataset Citation
Schindele, D., Meyer, A., Von Reibnitz, D. F., Kiesswetter, V., Schostak, M., Rak, M., & Hansen, C. (2019). High Resolution Prostate Segmentations for the ProstateX-Challenge (Prostate-X-Challenge) [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.2019.DEG7ZG1U


Info
titlePublication Citation

Coming soon


Info
titleTCIA Citation

Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI: 10.1007/s10278-013-9622-7

Other Publications Using This Data

TCIA maintains a list of publications that leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk.




Localtab
titleVersions

Version 1 (Current): 2020/09/18

Data TypeDownload all or Query/Filter
Segmentations (DICOM, 0.119 GB)

    

Corresponding Original MR Images from PROSTATEx (DICOM, 4kB)