Data Access

Note to curators! This macro is for collections that are restricted due to facial reconstruction possibility.

Click the Versions tab for more info about data releases.

Additional Resources for this Dataset

Note to curators! Use this any time you are linking to NCI's IDC/GDC/PDC resources.  The links below are examples and will need to be tailored to point to the specific dataset (see parameters in URLS).

• Imaging Data Commons (IDC) (Imaging Data)
• Proteomic Data Commons (PDC) (Proteomic & Clinical Data)
• Genomic Data Commons (GDC) (Genomic & Clinical Data)

Note to curators! Below are examples for what to do with other external resources/links that don't fit into the above categories.

The following external resources have been made available by the data submitters.  These are not hosted or supported by TCIA, but may be useful to researchers utilizing this collection.

• Software / Code on Github
• Genomics data in DbGAP
• Genomics data in Gene Expression Omnibus
• RSNA or kaggle link to molecular marker table if they only provide us a link

TCIA Collections Used (in part) in these analyses

:

• CPTAC-GBM
• TCGA-GBM
• TCGA-LGG
• UCSF-PDGM
• UPENN-GBM

Third Party Analyses of this Dataset

TCIA encourages the community to publish your analyses of our datasets. Below is a list of such third party analyses published using this Collection:

• <these get filled in as groups cite the dataset in their papers related to analysis of the 2021 task 1 & task2 using this Collection's DOI>

Detailed Description

•  the "challenge test set dataset" is sequestered on synapse as a tarball of nii & seg & age & diagnosis. Not available. Please see <website> for more detail.

The data used in BraTS Challenges often have some overlap with other TCIA Collections, cases, and series. Some filters for handling these, so that you can work with statistically not-duplicated images, include these below:

• Manifest of case identifiers between BraTS and TCIA
• Spreadsheet list of cases and series used in prior year BraTS Challenges  which may refer also to these:
  • Multimodal Brain Tumor Segmentation Challenge 2018 (BraTS)
  • Multimodal Brain Tumor Segmentation Challenge 2019
  • Segmentation Labels and Radiomic Features for the Pre-operative Scans of the TCGA-GBM collection (BraTS-TCGA-GBM)
  • Segmentation Labels and Radiomic Features for the Pre-operative Scans of the TCGA-LGG collection (BraTS-TCGA-LGG)
• Spreadsheet list of new (DICOM and NIFTI) series files with no TCIA DICOM equivalent: 
• Manifest of (DICOM and NIFTI) files sourced from other TCIA Collections, so you can avoid superset accidental duplication in case you want everything TCIA has, after you've gotten all of BRaTS data: 

Citations & Data Usage Policy

Other Publications Using This Data

TCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk.

Version X (Current): Updated yyyy/mm/dd

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