Summary
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![Example case in axial and sagittal view with corresponding zone segmentation. The 4-class segmentation consists of peripheral zone (pink), transitional zone (yellow), anterior fibromuscular stroma (blue) and distal prostatic urethra (brown) Example case in axial and sagittal view with corresponding zone segmentation. The 4-class segmentation consists of peripheral zone (pink), transitional zone (yellow), anterior fibromuscular stroma (blue) and distal prostatic urethra (brown)](/download/attachments/70230177/example_segmentation_20201120.PNG?version=1&modificationDate=1605901468370&api=v2) This collection contains prostate’s zonal segmentation for 98 cases randomly selected from the SPIE-AAPM-NCI PROSTATEx Challenges (PROSTATEx). The four-class segmentation encompasses the peripheral zone, transition zone, fibromuscular stroma and the distal prostatic urethra. As underlying images, we used transversal T2w scans. Segmentations were created by a medical student with experience in prostate segmentation and an expert urologist who instructed the student and double-checked the segmentations in the end. The DICOM representation of these segmentations were generated with dcmqi. |
Acknowledgements
This work has been funded by the EU and the federal state of Saxony-Anhalt, Germany under grant number ZS/2016/08/80388. We would like to thank the authors of the PROSTATEx challenge for providing this valuable dataset.
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active | true |
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title | Data Access |
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| Data AccessData Type | Download all or Query/Filter | License |
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Segmentations (DICOM, 143 MB) |
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url | https://wiki.cancerimagingarchive.net/download/attachments/70230177/ProstateX%20Zone%20Segmentations%20manifest_20201125.tcia?api=v2 |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?MinNumberOfStudiesCriteria=1&DateRange=11/01/2020-11/06/2020&CollectionCriteria=PROSTATEx&ThirdPartyCriteria=YES |
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Click the Versions tab for more info about data releases. Collections Used in this Third Party AnalysisBelow is a list of the Collections used in these analyses: Data Type | Download all or Query/Filter | License |
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Corresponding Original MR Images from PROSTATEx (DICOM, 558 MB) |
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url | https://wiki.cancerimagingarchive.net/download/attachments/70230177/ProstateX%20Zone%20Segmentations%20Corresponding%20Orignial%20files%20manifest_20201125.tcia?api=v2 |
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Please contact help@cancerimagingarchive.net with any questions regarding usage. |
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title | Detailed Description |
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| Detailed DescriptionImage Statistics |
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Modalities | SEG | Number of Patients | 98 | Number of Studies | 98 | Number of Series | 98 | Number of Images | 98 | Images Size (MB) | 143 |
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title | Citations & Data Usage Policy |
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| Citations & Data Usage Policy Tcia limited license policy |
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| Meyer, A., Schindele, D., von Reibnitz, D., Rak, M., Schostak, M., & Hansen, C. (2020). PROSTATEx Zone Segmentations [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.NBB4-4655 |
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title | Publication Citation |
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| Meyer, A., Rakr, M., Schindele, D., Blaschke, S., Schostak, M., Fedorov, A., & Hansen, C. (2019, April). Towards Patient-Individual PI-Rads v2 Sector Map: Cnn for Automatic Segmentation of Prostatic Zones From T2-Weighted MRI. 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019). 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI). https://doi.org/10.1109/isbi.2019.8759572 |
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| Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI: 10.1007/s10278-013-9622-7 |
Other Publications Using This DataTCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk. |
Localtab |
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| Version 1 (Current): 2020/11/25Data Type | Download all or Query/Filter |
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Segmentations (DICOM, 143 MB) |
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url | https://wiki.cancerimagingarchive.net/download/attachments/70230177/ProstateX%20Zone%20Segmentations%20manifest_20201125.tcia?api=v2 |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?MinNumberOfStudiesCriteria=1&DateRange=11/25/2020-11/25/2020&CollectionCriteria=PROSTATEx&ThirdPartyCriteria=YES |
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| Corresponding Original MR Images from PROSTATEx (DICOM, 558 MB) |
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url | https://wiki.cancerimagingarchive.net/download/attachments/70230177/ProstateX%20Zone%20Segmentations%20Corresponding%20Orignial%20files%20manifest_20201125.tcia?api=v2 |
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