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Summary

Excerpt

Prostate cancer T1- and T2-weighted magnetic resonance images (MRIs) were acquired on a 1.5 T Philips Achieva by combined surface and endorectal coil, including dynamic contrast-enhanced images obtained prior to, during and after I.V. administration of 0.1 mmol/kg body weight of Gadolinium-DTPA (pentetic acid). For scientific inquiries relating to the data-set, please contact Drs. C. Carl Jaffe (carl.jaffe@bmc.org) or Nicolas Bloch (nicolas.bloch@bmc.org).

 

 

Localtab Group
Localtab
activetrue
titleData Access

Data Access

Choosing the Download option will provide you with a file to launch the TCIA Download Manager to download the entire collection. If you want to browse or filter the data to select only specific scans/studies please use the Search By Collection option.

Data TypeDownload all or Query/Filter
Images (DICOM, 5.6GB) 
Prostate-Diagnosis metadata (XLS)Image Added
NRRD NCI ISBI Challenge - Segmentations (zip)
Prostate3T Training NCI ISBI Challenge - Segmentations (zip)

Click the Versions tab for more info about data releases.

Localtab
titleDetailed Description

Detailed Description

Collection Statistics

Updated 01/30/2013

Modalities

MR (T1, T2, and DCE sequences)

Number of Patients

92

Number of Studies

92

Number of Series

92

Number of Images

32,537

Image Size (gB)5.6

 

Metadata

Corresponding clinical metadata (XLS format) and 3D segmentation files (NRRD format) are offered as a supplement to this image collection. The XLS file contains pathology biopsy and excised gland tissue reports and the MRI radiology report for most of the collection's 53 prostate cancer cases.

  • Prostate-Diagnosis metadata (updated 2012-05-07)
  • NRRD 3D segmentations (2 separate sets of segmentations available)
    • NRRD segmentations (updated 2012-05-07)- The software used to generate the NRRD files on the MR T2W_TSE_AX image sequences was 3DSlicer. The 3DSlicer NRRD files allow visualization and downstream analysis of the following prostate components: prostate gland boundary; internal capsule; central gland, peripheral zone; seminal vesicles; urethra; cancer – dominant nodule; neurovascular bundle; penile bulb; ejaculatory duct; veru-montanum; and rectum. Presently, there are available mark-ups of 5 cases (case extension #'s 0006, 0014, 0019, 0021, 0048). These markups are made public courtesy (and copyrighted by) Dr. Nicolas Bloch as portions of his forthcoming online prostate cancer image atlas.
    • NCI_ISBI_Challenge-ProstateDx_Training_Segmentations.zip- This file contains segmentations for 30 Prostate-Diagnosis subjects in NRRD format which mark the boundaries of the central gland and peripheral zone. This data was provided as part of the NCI-ISBI 2013 Challenge - Automated Segmentation of Prostate Structures.

Note: see our tutorial onUsing 3D Slicer with the Prostate-Diagnosis dataif you are not familiar with using this kind of data.

Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy 

This collection is freely available to browse, download, and use for commercial, scientific and educational purposes as outlined in the Creative Commons Attribution 3.0 Unported License.  See TCIA's Data Usage Policies and Restrictions for additional details. Questions may be directed to help@cancerimagingarchive.net.

Please be sure to include the following citations in your work if you use this data set:

Info
titlePROSTATE-DIAGNOSIS Citation

The Cancer Imaging Archive Team. Data From PROSTATE-DIAGNOSIS. doi:10.7937/K9/TCIA.2015.FOQEUJVT

Info
titleTCIA Citation

Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. (paper)

Other Publications Using This Data

TCIA maintains a list of publications which leverage our data. At this time we are not aware of any publications based on this data. If you have a publication you'd like to add please contact the TCIA Helpdesk.

Localtab
titleVersions

Version 1 (Current): Updated 2013/01/30

Section
You can view and download these images on The Cancer Imaging Archive (TCIA) by clicking Image Removedand selecting the
Column
width70%

Imaging Data

Info
Data TypeDownload all or Query/Filter
Images (DICOM, 5.6GB) Image Removed
NCI ISBI Challenge - Segmentations (zip)Image Modified
Prostate3T Training Segmentations (zip)Image Removed

Data Access

Prostate and adjacent anatomy as seen in T2w MRI. Cutoff shows the MRI intensities along with the different regions: purple-prostate capsule, light green - peripheral zone, yellow - urethra, pink - ejaculatory ducts, gray- seminal vesicles, and dark green neurovascular bundles. Also, the dominant nodule (cancer) was annotated and shown in red.

Figure by Dr. Bloch, Boston Medical Center and Drs. Mirabela Rusu and Anant Madabhushi, Center for Computational Imaging and Personalized Diagnostics, Case Western Reserve University
Prostate-Diagnosis
collection.

Collection Statistics

Updated 2013/01/30

Modalities

MR (T1, T2, and DCE sequences)

Number of Patients

92

Number of Studies

92

Number of Series

368

Number of Images

32,537

Images Size (GB)5.6

If you are unsure how to download this collection, please view Searching by Collection or refer to TCIA's User's Guide for more detailed instructions on using the site.

Shared Lists

  • Prostate-Diagnosis Collection: 2012-03-15 Update- Use this shared list to obtain only the newer cases added on 2012-03-15.
  • Prostate-Diagnosis Collection: 2012-05-22 Update- Use this shared list to obtain only the newer cases added on 2012-05-22.

Note: See Section 3.7 of TCIA User Guide for help with shared lists.

Supporting Documentation and Metadata

Corresponding clinical
metadata (XLS
format
)
and 3D segmentation files (NRRD format) are offered as a supplement to this image collection. The XLS file contains pathology biopsy and excised gland tissue reports and the MRI radiology report for most of the collection's 53 prostate cancer cases.
  • Prostate-Diagnosis metadata (updated 2012-05-07)
  • NRRD 3D segmentations (2 separate sets of segmentations available)
    • NRRD segmentations (updated 2012-05-07)- The software used to generate the NRRD files on the MR T2W_TSE_AX image sequences was 3DSlicer. The 3DSlicer NRRD files allow visualization and downstream analysis of the following prostate components: prostate gland boundary; internal capsule; central gland, peripheral zone; seminal vesicles; urethra; cancer – dominant nodule; neurovascular bundle; penile bulb; ejaculatory duct; veru-montanum; and rectum. Presently, there are available mark-ups of 5 cases (case extension #'s 0006, 0014, 0019, 0021, 0048). These markups are made public courtesy (and copyrighted by) Dr. Nicolas Bloch as portions of his forthcoming online prostate cancer image atlas.
    • NCI_ISBI_Challenge-ProstateDx_Training_Segmentations.zip- This file contains segmentations for 30 Prostate-Diagnosis subjects in NRRD format which mark the boundaries of the central gland and peripheral zone. This data was provided as part of the NCI-ISBI 2013 Challenge - Automated Segmentation of Prostate Structures.

Note: see our tutorial on Using 3D Slicer with the Prostate-Diagnosis data if you are not familiar with using this kind of data.

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NRRD - Segmentations (zip)Image Added
NCI ISBI Challenge - Segmentations (zip)Image Added

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