Child pages
  • Osteosarcoma data from UT Southwestern/UT Dallas for Viable and Necrotic Tumor Assessment (Osteosarcoma Tumor Assessment)

Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

Summary


Excerpt

Osteosarcoma is the most common type of bone cancer that occurs in adolescents in the age of 10 to 14 years. The dataset is composed of Hematoxylin and eosin (H&E) stained osteosarcoma histology images. The data was collected by a team of clinical scientists at University of Texas Southwestern Medical Center, Dallas. Archival samples for 50 patients treated at Children’ s Medical Center, Dallas, between 1995 and 2015, were used to create this dataset. The images are labelled as Non-Tumor, Viable Tumor and Necrosis according to the predominant cancer type in each image. The annotation was performed by two medical experts. All images were divided between two pathologists for the annotation activity. Each image had a single annotation as any given image was annotated by only one pathologist. The dataset consists of 1144 images of size 1024 X 1024 at 10X resolution with the following distribution: 536 (47%) non-tumor images, 263 (23%) necrotic tumor images and 345 (30%) viable tumor tiles.



Localtab Group


Localtab
activetrue
titleData Access

Data Access

Click the Download button to save a ".tcia" manifest file to your computer, which you must open with the NBIA Data Retriever. Click the Search button to open our Data Portal, where you can browse the data collection and/or download a subset of its contents.

url

Data TypeDownload all or Query/Filter
Images and Features (DICOM, XX.X GBjpg, csv, 196MB)

 Image Removed

Supplemental Data (format)

Image Removed

Button Hyperlink
iconsearch
titleSearch
typestandard
http://google.com
targettrue

Click the Versions tab for more info about data releases.


Localtab
titleDetailed Description

Detailed Description

Image Statistics


Modalities

1Pathology

Number of Patients

4

Number of Studies

1

Number of Series

Number of Images

Images Size (GB)
Add any additional information as needed below. Likely would be something from site.

Images

1144

Images Size (MB)196



Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy

Add any special restrictions in here.

These collections are freely available to browse, download, and use for commercial, scientific and educational purposes as outlined in the Creative Commons Attribution 3.0 Unported License. Questions may be directed to help@cancerimagingarchive.net. Please be sure to acknowledge both this data set and TCIA in publications by including the following citations in your work:

Info
titleData Citation

Leavey, P., Sengupta, A., Rakheja, D., Daescu, O., Arunachalam, H. B., & Mishra, R. (2019). Osteosarcoma Dataset from UT Southwest/UT Dallas [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/tcia.2019.bvhjhdas


Info
titleAcknowledgement



Info
titleTCIA Citation

Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI: 10.1007/s10278-013-9622-7

Other Publications Using This Data

TCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk.


Localtab
titleVersions

Version

X

1 (Current): Updated

yyyy

2019/

mm

03/

dd

22

Data TypeDownload all or Query/Filter
Images and Features (DICOM, xx.x GB)

Image RemovedImage Removed

(Requires NBIA Data Retriever.)

Clinical Data (CSV)Link
Other (format)

Image Removed

Added new subjects.

Version 4: Updated 2018/10/24

Added new subjects.

Version 3: Updated 2018/06/30

Added new subjects.

Version 2: Updated 2018/04/26

Added new subjects.
jpg, csv, 196MB)

Image Added