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TCIA has partnered with CPTAC to host both the radiology and pathology imaging data generated by the project. The other data types will be hosted in separate tools and databases including:
CPTAC
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CPTAC Imaging Special Interest Group
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CPTAC imaging data is being made available on a release schedule that is coordinated with the CPTAC program releases of proteomic and genomic data. Learn more about the CPTAC Discovery data sets here.
Learn more about each cancer type by clicking on the collection names in the table below. Data currently available is listed below. Clicking on the number of subjects will take you to these data portals with that particular cancer type pre-selected. You can access the radiology and pathology data directly from the respective data portals. Learn more about the CPTAC Discovery data sets here.
Collection | Cancer Type | Location | Radiology Modalities | Radiology Total | Radiology Discovery | Pathology Total | Pathology Discovery |
| Clear Cell Carcinoma | Kidney | CR, CT, DX, MR, SR | 63 | 32 | 222 | 110 | |
| Glioblastoma Multiforme | Brain | CR, CT, DX, MR, NM, SC | 66 | 41 | 189 | 100 | |
| CPTAC-HNSCC | Head and Neck Squamous Cell Carcinoma | Head-Neck | CT, SC, MR | 64 | 63 | 112 | 112 |
| Squamous Cell Carcinoma | Lung | CR, CT, DX, NM, PT | 39 | 24 | 212 | 110 | |
| Adenocarcinoma | Lung | CT, MR, PT, CR, DX, NM | 33 | 15 | 244 | 111 | |
| CPTAC-PDA | Pancreatic Ductal Adenocarcinoma | Pancreas | CR, CT, DX, MR, PT, RF, US, XA | 98 | 76 | 168 | 150 |
| Corpus Endometrial Carcinoma | Uterus | CT, MR, PT, CR, DX | 74 | 21 | 250 | 101 |
Corresponding Genomic, Proteomic, and Clinical Data
The other data types will be hosted in separate tools and databases including:
- CPTAC Data Portal
- Proteomic Data Commons
- Genomic Data Commons
- CPTAC Python/R notebooks are available at https://github.com/PayneLab/cptac and on Google Colab at https://cutt.ly/ekMMht7.
CPTAC 2 Cohorts
| Collection | Cancer Type | Location | Pathology (Subjects) |
|---|---|---|---|
| Breast Invasive Carcinoma | Breast | 134 | |
| Colon Adenocarcinoma | Colon | 106 | |
| Ovarian Serous Cystadenocarcinoma | Ovary | 102 |
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