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  • ROI Masks Defining Low-Grade Glioma Tumor Regions In the TCGA-LGG Image Collection (TCGA-LGG-Mask)

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Localtab Group



Localtab
activetrue
titleData Access

Data Access

Tcia head license access


Data TypeDownload all or Query/FilterLicense
Images (DICOM, 9.03 GB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/24282890/doiJNLP-LxVyYE8d.tcia?api=v2

TCGA-LGG subset manifest for TCIA Radiology portal

Note: Limited Access. Please request both TCGA-LGG-Mask and TCGA-LGG in your Agreement.
Download requires the NBIA Data Retriever

Tcia restricted license


Clinical data (CSV)


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urlhttps://wiki.cancerimagingarchive.net/download/attachments/24282890/TCGA_clinical_INFO.csv?api=v2

TCGA_clinical_INFO.csv


Tcia cc by 3

VASARI information (CSV)


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urlhttps://wiki.cancerimagingarchive.net/download/attachments/24282890/TCGA_vasari_INFO.csv?api=v2 v2

TCGA_vasari_INFO.csv


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VASARI MR feature key (PDF)


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urlhttps://wiki.cancerimagingarchive.net/download/attachments/24282890/VASARI_MR_featurekey.pdf?api=v2 v2

VASARI_MR_featurekey


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Matlab Segmentations Segmentations (109 subjects, 406 files, MAT, ZIP, 18MB)

Please contact help@cancerimagingarchive.net to request access. 
More information is here and in the Detailed Description for this Collection.

TCIA Restricted

Please contact help@cancerimagingarchive.net  with any questions regarding usage.


Additional Resources for this Dataset

The following external resources have been made available by the data submitters.  These are not hosted or supported by TCIA,but may be useful to researchers utilizing this collection.

Collections Used in this Third Party Analysis

Below is a list of the Collections used in these analyses:

  • TCGA-LGG Note: Limited Access. You may need to request both TCGA-LGG-Mask and TCGA-LGG. 




Localtab
titleDetailed Description

Detailed Description

Access to this collection's MATLAB ROI masks is currently restricted by Harrison X. Bai from the Department of Radiology, Hospital of University of Pennsylvania. Access could be granted if this dataset is properly acknowledged in your research. If you believe this data will be useful for a current or planned research project, you may request access. Please make sure that the form is filled out by a formal Principal Investigator (PI) and please also make sure to include your institutional address with contact information. The Data Use Agreement will be forwarded by TCIA Helpdesk for review by Harrison X. Bai and you will be informed of his decision. In most cases, access will be granted and members of your research team will be granted access to the dataset. Note: you must have TCIA login credentials in order to access any restricted collection.




Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy 

Tcia limited license policy


Info
titleData Citation

Su, C., Vallières, M., & Bai, H. (2017). ROI Masks Defining Low-Grade Glioma Tumor Regions In the TCGA-LGG Image Collection [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/K9/TCIA.2017.BD7SGWCA



Info
titlePublication Citation

Zhou, H., Vallières, M., Bai, H. X., Su, C., Tang, H., Oldridge, D., Zhang, Z., Xiao, B., Liao, W., Tao, Y., Zhou, J., Zhang, P., & Yang, L. (2017). MRI features predict survival and molecular markers in diffuse lower-grade gliomas. Neuro-Oncology, 19(6), 862–870. https://doi.org/10.1093/neuonc/now256



Info
titleTCIA Citation

Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F. (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository. Journal of Digital Imaging, 26(6), 1045–1057. https://doi.org/10.1007/s10278-013-9622-7

Other Publications Using This Data

TCIA maintains a list of publications that leverage TCIA data. If you have a manuscript you'd like to add please contact TCIA's Helpdesk.




Localtab
titleVersions

Version 1 (Current): 2017/03/17


Data TypeDownload all or Query/Filter
Images (DICOM, 9.03 GB)
Clinical data (CSV)

VASARI information (CSV)

Scores

VASARI MR feature key (PDF)

Keys

Matlab Segmentations 

Please contact help@cancerimagingarchive.net to request access. 
More information is here and in the Detailed Description for this Collection.





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