Localtab |
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active | true |
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title | Data Access |
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| Click the Download button to save a ".tcia" manifest file to your computer, which you must open with the NBIA Data Retriever. Click the Search button to open our Data Portal, where you can browse the data collection and/or download a subset of its contents.
Data Type | Download all or Query/Filter | License |
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Slide Images (.SVS, | XX.X GB)Image RemovedImage Removed | Supplemental Data (format) | Image Removed | Click the Versions tab for more info about data releases.53 GB) |
Tcia button generator |
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url | https://faspex.cancerimagingarchive.net/aspera/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6IjU0MCIsInBhc3Njb2RlIjoiM2I4MDVjNGMxYzViMjY2YmFlMzdmYTcxMmU0ZDgyNzYyZDBjNTE4OSIsInBhY2thZ2VfaWQiOiI1NDAiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0= |
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Tcia button generator |
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label | Search |
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url | https://pathdb.cancerimagingarchive.net/imagesearch?f%5B0%5D=collection:sln_breast |
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(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) | | Supplemental Data (CSV, 3kb) |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/52763339/target.csv?version=1&modificationDate=1563461391272&api=v2 |
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Localtab |
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title | Detailed Description |
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Image Statistics |
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Modalities | Pathology, WSI | Number of PatientsParticipants | 78 | Number of Images | 130 | Images Size (GB) | 53 |
target.csv contains a binary label for each slide image in the dataset. - target=1 means that the image contains breast cancer metastases.
- target=0 means that the image does not contain breast cancer metastases.
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Localtab |
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title | Citations & Data Usage Policy |
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| Add any special restrictions in here. These collections are freely available to browse, download, and use for commercial, scientific and educational purposes as outlined in the Creative Commons Attribution 3.0 Unported License. Questions may be directed to help@cancerimagingarchive.net. Please be sure to acknowledge both this data set and TCIA in publications by including the following citations in your work: Tcia limited license policy |
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Info |
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| Campanella, G., Hanna, M. G., Brogi, E., & Fuchs, T. J. (2019). Breast Metastases to Axillary Lymph Nodes [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/tcia.2019.3xbn2jcc | Info |
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| DOI goes here. Create using pubhub with information from Collection Approval form |
Info |
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title | Publication Citation |
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| “Clinical-grade Computational Pathology using Weakly Supervised Deep Learning on Whole Slide Images”, Gabriele Campanella, Matthew G., Hanna, M. G., Luke Geneslaw, Allen Miraflor, Vitor L., Miraflor, A., Werneck Krauss Silva, Klaus V., Busam, K. J. Busam, Edi Brogi, Victor E., Reuter, David SV. E., Klimstra, Thomas J. Fuchs, Nature Medicine, July 2019D. S., & Fuchs, T. J. (2019). Clinical-grade computational pathology using weakly supervised deep learning on whole slide images. Nature Medicine (Vol. 25, Issue 8, pp. 1301–1309). Springer Science and Business Media LLC. https://doi.org/10.1038/s41591-019-0508-1 |
Info |
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| Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI: 10.1007/s10278-013-9622-7 |
TCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add pleaseplease contact the TCIA's Helpdesk. |
Localtab |
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| 0617
Data Type | Download all or Query/Filter |
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Images (.SVS, | xx.x GB)Image RemovedImage Removed (Requires NBIA Data Retriever.) | Clinical Data (CSV) | Link | Other (format) | 53 GB) |
Tcia button generator |
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url | https://faspex.cancerimagingarchive.net/aspera/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6IjU0MCIsInBhc3Njb2RlIjoiM2I4MDVjNGMxYzViMjY2YmFlMzdmYTcxMmU0ZDgyNzYyZDBjNTE4OSIsInBhY2thZ2VfaWQiOiI1NDAiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0= |
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Tcia button generator |
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label | Search |
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url | https://pathdb.cancerimagingarchive.net/imagesearch?f%5B0%5D=collection:sln_breast |
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(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) | Supplemental Data (CSV) |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/52763339/target.csv?version=1&modificationDate=1563461391272&api=v2 |
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(Download requires the NBIA Data Retriever) | Image Removed
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