Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

Summary

Excerpt
Image Modified

This collection contains subjects from the National Cancer Institute’s Applied Proteogenomics OrganizationaL Learning and Outcomes (APOLLO) network <disease here> cohort. The  Esophageal Squamous Cell Carcinoma cohort (APOLLO-5-ESCA). The APOLLO network is a collaboration between between NCI, the Department of Defense (DoD), and the Department of Veterans Affairs (VA) to incorporate proteogenomics into patient care as a way of looking beyond the genome, to the activity and expression of the proteins that the genome encodes. The emerging field of proteogenomics aims to better predict how patients will respond to therapy by screening their tumors for both genetic abnormalities and protein information, an approach that has been made possible in recent years due to advances in proteomic technology. Radiology and pathology images from APOLLO patients are being collected and made publicly available by The Cancer Imaging Archive to enable researchers to investigate cancer phenotypes that may correlate to corresponding proteomic, genomic, and clinical data.

Imaging from each cancer type will be contained in its own TCIA Collection, with the collection name "APOLLO-5-cancertype", and is being made available on a release schedule that is coordinated with the APOLLO program releases of proteomic and genomic data. Radiology imaging is collected from standard-of-care imaging performed on patients immediately before the pathological diagnosis, and from follow-up scans where available. For this reason, the radiology image data sets can be heterogeneous in terms of scanner modalities, manufacturers, and acquisition protocols. Pathology imaging is collected as part of the APOLLO qualification and laser capture microdissection (in some cases) workflow. Limited Access data is available only to members of the APOLLO network, and Publicly Available data may be under a limited publication embargo.


Search
Localtab Group


   

(Download requires NBIA Data Retriever

Clinical & Genomic data (External
Localtab
activetrue
titleData Access

Data Access

Publicly Available

This is a limited access data set. To request access, please contact help@cancerimagingarchive.net.

Data TypeDownload all or Query/FilterLicense
Images (DICOM,
##GB)
Tcia button generator
Tcia button generator
labelSearch
2.0 GB)


Tcia button generator
exttrue
label
urlhttps://
portalData TypeDownload all or Query/FilterImages (DICOM, ## GB) Tcia button generator   Tcia button generator
labelSearch
Clinical & Genomic data (External)
wiki.
gdc.cancer.gov/projects/VAREPOP-APOLLO

Limited Access

cancerimagingarchive.net/download/attachments/96338104/APOLLO-5-ESCA-manifest.tcia?api=v2



Tcia button generator
ext
true
labelSearch
urlhttps://
portal
nbia.
gdc
cancerimagingarchive.
cancer.gov/projects/VAREPOP-APOLLO
net/nbia-search/?MinNumberOfStudiesCriteria=1&CollectionCriteria=APOLLO-5-ESCA


(Download requires the NBIA Data Retriever

TCIA Restricted

Click the Versions tab for more info about data releases.


Localtab
titleDetailed Description
Publicly Available

Detailed Description

Collection Statistics


Modalities

PET, CT, MRI, MRA + others

Number of Participants

2

Number of Studies

4

Number of Series

16

Number of Images

Image Size (GB)

Limited Access Detailed Description

Collection Statistics

Modalities

PET, CT, MRI, MRA + others

Number of Participants

Number of Studies

Number of Series

Number of Images3,811
Image Size (GB)2.0

Include Page
APOLLO Date Handling
APOLLO Date Handling


Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy 

Tcia limited license policy

Info
titleData Citation

Applied Proteogenomics OrganizationaL Learning and Outcomes (APOLLO) Research Network. (2021). Data from the Applied Proteogenomics OrganizationaL Learning and Outcomes Esophageal Squamous Cell Carcinoma cohort [APOLLO-5-ESCA] Collection [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/n69a-7a26

This data set may be subject to usage restrictions set out by the APOLLO network. In addition, TCIA usage and citation guidelines must be followed. See TCIA's Data Usage Policies and Restrictions for details. Questions may be directed to help@cancerimagingarchive.net.

Please be sure to include the following citations in your work if you use this data set:

Info
titleData Citation
<DOI here> 


Info
titleAcknowledgement

Citing APOLLO Data in Publications 

The APOLLO Research Network require that publications using data from this program (1) cite all relevant publications and preprints describing the APOLLO data referenced in the manuscript; and (2) cite the relevant DOIs and/or study accession numbers for the data referenced in the manuscript. 

Acknowledging the APOLLO Research Network in Publications 

The APOLLO Research Network requests that publications using data from this program include the following statement: “Data used in this publication were generated by the Applied Proteogenomics OrganizationaL Learning and Outcomes (APOLLO) Research Network, a Federal Precision Oncology and Cancer Moonshot Program of the Department of Defense, Department of Veterans Affairs, and National Cancer Institute."


Info
titleTCIA Citation

Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057.  DOI: 10.1007/s10278-013-9622-7

Other Publications Using This Data

TCIA maintains a list of publications that leverage our data. At this time, we are not aware of any publications based on this data. If you have a publication you'd like to add, please contact the TCIA Helpdesk.


   (Requires
Localtab
titleVersions

Version 1 (Current):

Updated 2015

2021/

09

11/

14

24

Publicly Available

Data TypeDownload all or Query/FilterLicense
Images (
DICOM, ## GB
DICOM, 2.0 GB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/96338104/APOLLO-5-ESCA-manifest.tcia?api=v2
 



Tcia button generator
labelSearch
  (Requires the NBIA Data Retriever.)

Limited Access

urlhttps://nbia.cancerimagingarchive.net/nbia-search/?MinNumberOfStudiesCriteria=1&CollectionCriteria=APOLLO-5-ESCA


(Download requires
Data TypeDownload all or Query/Filter
Images (DICOM, ## GB)
Tcia button generator
Tcia button generator
labelSearch
.
) 

TCIA Restricted