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- Welcome (Bob Nordstrom)
- Clinical Proteomic Tumor Analysis Consortium (CPTAC) Project Overview (Chris Kinsinger, 15min)
- CPTAC radiology & pathology image data at TCIA – live demo (Justin Kirby, 15min)
- CPTAC Data Portal and the Proteomics Data Commons (R. Rajesh Thangudu, 30min)
- CPTAC genomic data at the Genomics Data Commons (Ana Robles, 15min)
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CPTAC imaging data is being made available on a release schedule that is coordinated with the CPTAC program releases of proteomic and genomic data.
Learn more about each cancer type by clicking on the collection names in the table below. Data currently available is listed below. Clicking on the number of subjects will take you to these data portals with that particular cancer type pre-selected. You can access the radiology and pathology data directly from the respective data portals.
Collection | Cancer Type | Location | Radiology Modalities | Radiology Tumor Annotations | Radiology Total Subjects | Pathology Total Subjects |
| Acute Myeloid Leukemia | Marrow, Blood | 88 | ||||
| Clear Cell Carcinoma | Kidney | CT, MR |
60
, RTSTRUCT | CPTAC-CCRCC-Tumor-Annotations | 65 | 222 | |||
| Non-Clear Cell Renal Cell Carcinoma | Kidney | CT, MR | 4 | 39 |
| Cutaneous Melanoma | Skin | CT, MR, PT | 13 |
| 93 | |||
| Glioblastoma Multiforme | Brain | CT, MR |
70 |
| 200 | |||
| CPTAC-HNSCC | Head and Neck Squamous Cell Carcinoma | Head-Neck | CT, MR, PT |
| , RTSTRUCT | CPTAC-HNSCC-Tumor-Annotations | 122 | 112 | ||
| Squamous Cell Carcinoma | Lung | CT, PT | 36 |
| 211 | |||||
| Adenocarcinoma | Lung | CT, MR, PT | 25 |
| 230 | |||
| CPTAC-PDA | Pancreatic Ductal Adenocarcinoma | Pancreas | CT, MR, PT, US |
| CPTAC-PDA-Tumor-Annotations | 108 | 178 | ||||
| CPTAC-SAR | Sarcomas | Abdomen, Arm, Bladder, Chest, Head-Neck, Kidney, Leg, Retroperitoneum, Stomach, Uterus | CT, MR, PT | 24 | 88 | |
| Corpus Endometrial Carcinoma | Uterus | CT, MR, PT |
, US | CPTAC-UCEC-Tumor-Annotations | 85 | 250 |
Corresponding Genomic, Proteomic, and Clinical Data
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Also: Identification of protein biomarkers in human serum using iTRAQ and shotgun mass spectrometry Methods Mol Biol. 2013;1061:291-307. doi: 10.1007/978-1-62703-589-7_18. Koutroukides TA1
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