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The NBIA Data Retriever is a software product you can download and install so install so that you can download radiology images from from the TCIA Radiology Portal. This guide documents the command-line interface (CLI) of the NBIA Data Retriever. See the Cancer Imaging Archive User's Guide to learn how to use the Graphical User Interface (GUI) of the TCIA Radiology Portal.
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mkdir /usr/share/desktop-directories/ wget -P ~/NBIA-Data-Retriever https://cbiit-download.nci.nih.gov/nbia/releases/ForTCIA/NBIADataRetriever_4.24/nbia-data-retriever-4.4.2.deb dpkg -i ~/NBIA-Data-Retriever/nbia-data-retriever-4.4.2.deb |
Note that an RPM package is also available for operating systems that don't support *.deb packages.
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| Option | Description |
|---|---|
| -c, -C, --cli, --CLI | Indicates running as a CLI app |
| -cd, -CD, --CD or –cd | On Linux, run as Classic directory type.Run with classic directory naming, which organizes files in a child folder under the destination folder as follows: Collection Name > Patient ID > Study Instance UID > Series Instance UID |
| -d, -D <download directory> | Required. The user must have write permission for the directory specified with this option. |
| -dd, -DD, --DD or –dd | On Linux, run as Descriptive directory type. This is the default.Run with descriptive directory naming, which is the default. A descriptive directory name organizes the files in a child folder under the destination folder as follows: Collection Name > Patient ID > Study Date + Study ID + Study Description (54 char max) + last 5 digits of Study Instance UID > Series Number + Series Description (54 char max) + last 5 digits of Series Instance UID |
| -f, -F | Skip the series the user does not have access to. Force the user to download the series if the user has access. Default is false. |
| -l <credential file> | Required when the manifest file has series from restricted collections. Optional when the manifest file has series from public collections only. |
| -m, -M, --md5, –MD5 | Enable validation of the checksums of the downloaded files. Default is that checksums will not be validated. |
| -p, -P <password> | Optional |
| -q, -Q | Quiet. Default is false. |
| -u, -U <user name> | Optional |
| -v, -V | Verbose. Default is false. |
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