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  • A DICOM dataset for evaluation of medical image de-identification (Pseudo-PHI-DICOM-Data)

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delay10
locationhttps://doi.org/10.7937/s17z-r072

Summary

Excerpt

Open access or shared research data must comply with (HIPAA) patient privacy regulations. These regulations require the de-identification of datasets before they can be placed in the public domain.  The process of image de-identification is time consuming, requires significant human resources, and is prone to human error.  Automated image de-identification algorithms have been developed but the research community requires some method of evaluation before such tools can be widely accepted.  This evaluation requires a robust dataset that can be used as part of an evaluation process for de-identification algorithms.  

We developed a DICOM dataset that can be used to evaluate the performance of de-identification algorithms. DICOM image information objects were selected from datasets published in TCIA.  Synthetic Protected Health Information (PHI) was generated and inserted into selected DICOM data elements to mimic typical clinical imaging exams.  The evaluation dataset was de-identified by a TCIA curation team using standard TCIA tools and procedures. We are publishing the evaluation dataset (containing synthetic PHI) and de-identified evaluation dataset (result of TCIA curation) in advance of a potential competition, sponsored by the National Cancer Institute (NCI), for de-identification algorithm evaluation, and de-identification of medical image datasets. The evaluation dataset published here is a subset of a larger evaluation dataset that was created under contract for the National Cancer Institute. This subset is being published to allow researchers to test their de-identification algorithms and promote standardized procedures for validating automated de-identification.

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Localtab Group


Localtab
activetrue
titleData Access

Data Access

Data TypeDownload all or Query/FilterLicense

Images,  (DICOM,

499

609 MB)

Evaluation dataset


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/80969777/Pseudo-
PHI
Phi-
DICOM-Data%20Evaluation%20Data%20manifest%20April%201%202021
DICOM%20Evaluation%20dataset%20April%207%202021.tcia?api=v2



Tcia button generator
labelSearch
urlhttps://
public
nbia.cancerimagingarchive.net/nbia-search/?
saved-cart=nbia-24401617306635777
MinNumberOfStudiesCriteria=1&PatientCriteria=6670427471,9189822998,9894340694,8989193730,8155012288,571403367,292821506,339833062,3642991663,6774825273,8732322741,7255997752,7361647728,6451050561,292821506,8834647487,6774825273,6451050561,8548156246,4025360156,6614238035,9894340694,6415974217,3209648408,9894340694,8189244869



(Download requires the NBIA Data Retriever)

Tcia cc by 4

Images,  (DICOM,

500

606 MB)

De-identified Evaluation dataset


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/80969777/Pseudo-PHI-
DICOM
DICOM%20De-
Data%20De-identified%20April%201%202021
id%20Evaluation%20dataset%20April%207%202021.tcia?api=v2



Tcia button generator
labelSearch
urlhttps://
public
nbia.cancerimagingarchive.net/nbia-search/?
saved-cart=nbia-31961617307340534
MinNumberOfStudiesCriteria=1&PatientCriteria=Pseudo-PHI-005,Pseudo-PHI-015,Pseudo-PHI-019,Pseudo-PHI-001,Pseudo-PHI-010,Pseudo-PHI-014,Pseudo-PHI-018,Pseudo-PHI-002,Pseudo-PHI-013,Pseudo-PHI-012,Pseudo-PHI-020,Pseudo-PHI-011,Pseudo-PHI-006,Pseudo-PHI-011,Pseudo-PHI-016,Pseudo-PHI-008,Pseudo-PHI-017,Pseudo-PHI-007,Pseudo-PHI-021,Pseudo-PHI-001,Pseudo-PHI-003,Pseudo-PHI-009,Pseudo-PHI-008,Pseudo-PHI-021,Pseudo-PHI-021,Pseudo-PHI-004



(Download requires the NBIA Data Retriever)

Tcia cc by 4

Patient Mapping (csv, 0.6 kB)

Evaluation/De-identified


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/80969777/Pseudo-PHI-DICOM-Dataset%20patid_crosswalk.csv?api=v2



Tcia cc by 4

UID Mapping (csv, 213 kB)

Evaluation/De-identified


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/80969777/Pseudo-PHI-DICOM-Dataset%20uid_crosswalk.csv?api=v2



Tcia cc by 4

Click the Versions tab for more info about data releases.

Please contact help@cancerimagingarchive.net  with any questions regarding usage.

Additional Resources for this Dataset

The NCI Cancer Research Data Commons (CRDC) provides access to additional data and a cloud-based data science infrastructure that connects data sets with analytics tools to allow users to share, integrate, analyze, and visualize cancer research data.


Localtab
titleDetailed Description

Detailed Description

Image Statistics


Modalities

CR, CT, DX, MG, MR, PT

Number of Patients

4042

Number of Studies

4244

Number of Series

5052

Number of Images

32783386

Images Size (MBGB)9991.2

There are 20 21 patients, 21 22 studies, 25 26 series but the patient ids, study instance uids, and series instance uids are different between the 2 datasets thus resulting in a double count.


Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy

tcia-limited-license-4-internationalpolicy

Info
titleData Citation

Rutherford, M., Mun, S.K., Levine, B., Bennett, W.C., Smith, K., Farmer, P., Jarosz, J., Wagner, U., Farahani, K., Prior, F. (2021). A DICOM dataset for evaluation of medical image de-identification (Pseudo-PHI-DICOM-Data) [Data set]The Cancer Imaging Archive. DOI: https://doi.org/10.7937/s17z-r072


Info
titlePublication Citation

Rutherford, M., Mun, S.K., Levine, B., Bennett, W.C., Smith, K., Farmer, P., Jarosz, J., Wagner, U., Freyman, J., Blake, G., Tarbox, L., Farahani, K., Prior, F. (2021). A DICOM dataset for evaluation of medical image de-identification, Nature Scientific Data (pending). DOI: 10.1038/s41597-021-00967-y


Info
titleTCIA Citation

Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI: 10.1007/s10278-013-9622-7

Other Publications Using This Data

TCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk.


Localtab
titleVersions

Version

1

2 (Current): Updated 2021/04/

01

07

Data TypeDownload all or Query/Filter

Images,  (DICOM, 499 609 MB)

Evaluation dataset


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/80969777/Pseudo-
PHI
Phi-
DICOM-Data%20Evaluation%20Data%20manifest%20April%201%202021
DICOM%20Evaluation%20dataset%20April%207%202021.tcia?api=v2



Tcia button generator
labelSearch
urlhttps://
public
nbia.cancerimagingarchive.net/nbia-search/?
saved-cart=nbia-24401617306635777
MinNumberOfStudiesCriteria=1&PatientCriteria=6670427471,9189822998,9894340694,8989193730,8155012288,571403367,292821506,339833062,3642991663,6774825273,8732322741,7255997752,7361647728,6451050561,292821506,8834647487,6774825273,6451050561,8548156246,4025360156,6614238035,9894340694,6415974217,3209648408,9894340694,8189244869



(Download requires the NBIA Data Retriever)

Images,  (DICOM, 500 606 MB)

De-identified Evaluation dataset


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/80969777/Pseudo-PHI-
DICOM
DICOM%20De-
Data%20De-identified%20April%201%202021
id%20Evaluation%20dataset%20April%207%202021.tcia?api=v2



Tcia button generator
labelSearch
urlhttps://
public
nbia.cancerimagingarchive.net/nbia-search/?
saved-cart=nbia-31961617307340534
MinNumberOfStudiesCriteria=1&PatientCriteria=Pseudo-PHI-005,Pseudo-PHI-015,Pseudo-PHI-019,Pseudo-PHI-001,Pseudo-PHI-010,Pseudo-PHI-014,Pseudo-PHI-018,Pseudo-PHI-002,Pseudo-PHI-013,Pseudo-PHI-012,Pseudo-PHI-020,Pseudo-PHI-011,Pseudo-PHI-006,Pseudo-PHI-011,Pseudo-PHI-016,Pseudo-PHI-008,Pseudo-PHI-017,Pseudo-PHI-007,Pseudo-PHI-021,Pseudo-PHI-001,Pseudo-PHI-003,Pseudo-PHI-009,Pseudo-PHI-008,Pseudo-PHI-021,Pseudo-PHI-021,Pseudo-PHI-004



(Download requires the NBIA Data Retriever)

Patient Mapping (csv)

Evaluation/De-identified


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/80969777/Pseudo-PHI-DICOM-Dataset%20patid_crosswalk.csv?api=v2



UID Mapping (csv)

Evaluation/De-identified


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/80969777/Pseudo-PHI-DICOM-Dataset%20uid_crosswalk.csv?api=v2



Note: Two series were removed at the request of the submitterRemoved head imaging from 8 series.

Version 1: Updated 2021/01/31

Data TypeDownload all or Query/Filter

Images,  (DICOM, 653 MB)

Evaluation dataset


Tcia button generator
labelSearch
urlhttps://nbia.cancerimagingarchive.net/nbia-search/?MinNumberOfStudiesCriteria=1&PatientCriteria=6670427471,9189822998,9894340694,8989193730,8155012288,571403367,292821506,339833062,3642991663,6774825273,8732322741,7255997752,7361647728,6451050561,292821506,8834647487,6774825273,6451050561,8548156246,4025360156,6614238035,9894340694,6415974217,3209648408,9894340694,8189244869



(Download requires the NBIA Data Retriever)

Images,  (DICOM, 648 MB)

De-identified Evaluation dataset


Tcia button generator
labelSearch
urlhttps://nbia.cancerimagingarchive.net/nbia-search/?MinNumberOfStudiesCriteria=1&PatientCriteria=Pseudo-PHI-005,Pseudo-PHI-015,Pseudo-PHI-019,Pseudo-PHI-001,Pseudo-PHI-010,Pseudo-PHI-014,Pseudo-PHI-018,Pseudo-PHI-002,Pseudo-PHI-013,Pseudo-PHI-012,Pseudo-PHI-020,Pseudo-PHI-011,Pseudo-PHI-006,Pseudo-PHI-011,Pseudo-PHI-016,Pseudo-PHI-008,Pseudo-PHI-017,Pseudo-PHI-007,Pseudo-PHI-021,Pseudo-PHI-001,Pseudo-PHI-003,Pseudo-PHI-009,Pseudo-PHI-008,Pseudo-PHI-021,Pseudo-PHI-021,Pseudo-PHI-004



(Download requires the NBIA Data Retriever)

Patient Mapping (csv)

Evaluation/De-identified


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/80969777/Pseudo-PHI-DICOM-Dataset%20patid_crosswalk.csv?api=v2



UID Mapping (csv)

Evaluation/De-identified


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/80969777/Pseudo-PHI-DICOM-Dataset%20uid_crosswalk.csv?api=v2