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Summary

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locationhttps://www.cancerimagingarchive.net/collection/healthy-total-body-cts/

Excerpt

This data set includes low-dose whole body CT images and tissue segmentations of thirty healthy adult research participants who underwent

a

PET/CT

scan

imaging on the uEXPLORER total-body PET/CT system at UC Davis. Participants included in this study were healthy adults, 18 years of age or older, who were able to provide informed written consent. The participants' age, gender, weight, height, and body mass index are also provided.

  

Fifteen participants underwent

a

PET/CT

scan

imaging at three

different

timepoints during a 3-hour period (0 minutes, 90 minutes, and 180 minutes) after PET radiotracer injection, while the remaining 15 participants

underwent six CT scans

were imaged at six timepoints during a 12-hour period (additionally at 360 minutes, 540 minutes, and 720 minutes). The imaging timepoint is indicated in the Series Description DICOM tag, with a value of either 'dyn', '90min', '3hr', '6hr', '9hr', or '12hr', corresponding to the delay after PET tracer injection. CT images were acquired immediately before PET image acquisition. Currently, only CT images are included in the data set from either three or six timepoints. The tissue segmentations include 37 tissues consisting of 13 abdominal organs, 20 different bones, subcutaneous and visceral fat, skeletal and psoas muscle. Segmentations were automatically generated at the 90 minute timepoint for each participant using MOOSE, an AI segmentation tool for whole body data. The segmentations are provided in NIFTI format and may need to be re-oriented to correctly match the CT image data in DICOM format.

The uEXPLORER CT scanner is an 80-row, 160 slice CT scanner typically used for anatomical imaging and attenuation correction for PET/CT

imaging

. The CT scan obtained at 90 minutes was performed with 140 kVp and an average of 50 mAs for all subjects

while at

. At all other time-points (0 minutes, 180 minutes,

ect

etc.) the CT scan was obtained with 140 kVp and an average of 5 mAs. CT images were reconstructed into a 512x512x828 image matrix with 0.9766x0.9766x2.344 mm3 voxel size.

 It is planned to add the FDG PET dynamic total-body sequences in a future version update. This data is useful as a benchmark for evaluating normal physiological state, and comparing it to pathological states. Combined with other data sets, it can be used to evaluate the progress and impact of aging related diseases, cancer progression and response to treatment, and other conditions. It is unique in including healthy research participants, as well as for including full body images from the brain to the feet. It can also be used to train AI algorithms to enable automatic segmentation of the previously described tissues

A key is provided along with the segmentations download in the Data Access table which details the organ values.

Acknowledgements

We would like to acknowledge the individuals and institutions that have provided data for this collection:

...

Localtab Group


Localtab
activetrue
titleData Access

Data Access

Tcia head license access
This is a limited access data set. To request access please register an account on the NCTN

Data
Archive.  After logging in, use the "Request Data" link in the left side menu.  Follow the on screen instructions, and enter NCT00352534 when asked which trial you want to request.  In step 2 of the Create Request form, be sure to select “Imaging Data Requested”. Please contact NCINCTNDataArchive@mail.nih.gov for any questions about access requests.
Data
TypeDownload all or Query/FilterLicense

Images, (DICOM,

XX.X

59 GB)



Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/140312957/Healthy%20Total%20Body%20CTs%20July%202023.tcia?api=v2



Tcia button generator
labelSearch
urlhttps://nbia.cancerimagingarchive.net/nbia-search/?MinNumberOfStudiesCriteria=1&CollectionCriteria=Healthy-Total-Body-CTs



(Download requires NBIA Data Retriever)

Tcia restricted license




Segmentations (NIfTI) & Segmentation Organ Values spreadsheet (zip, 81.5 MB)


Tcia button generator

Clinical data (CSV)

Segmentation Organ values

urlhttps://wiki.cancerimagingarchive.net/download/attachments/140312957/Healthy-Total-Body%20CTs%20NIfTI%20Segmentations%20and%20Segmentation%20Organ%20Values%20spreadsheet.zip?api=v2



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Clinical Data (.xlsx, 14 KB)


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urlhttps://wiki.cancerimagingarchive.net/download/attachments/140312957/
segmentation_organ_values
Healthy_Total_Body_CTs_Clinical_data%20v2.xlsx?api=v2
Click the Versions tab for more info about data releases.



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Localtab
titleDetailed Description

Detailed Description

Image Statistics

Radiology Image Statistics

Modalities

CT

Number of Patients

30

Number of Studies

135

Number of Series

135

Number of Images

111778
Images Size (GB)59




Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy

Tcia limited license policy

Info
titleData Citation

DOI goes here. Create using Datacite with information from Collection Approval formSelfridge, A. R., Spencer, B., Shiyam Sundar, L. K., Abdelhafez, Y., Nardo, L., Cherry, S. R., & Badawi, R. D. (2023). Low-Dose CT Images of Healthy Cohort (Healthy-Total-Body CTs) (Version 1) [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/NC7Z-4F76


Info
titlePublication Citation

We ask on the proposal form if they have ONE traditional publication they'd like users to cite.

Info
titleAcknowledgement

Required acknowledgements only (ex:The CPTAC program requests that publications using data from this program...). If they just want to thank someone, that goes in the Acknowledgement section underneath the Summary.Sundar, L. K. S., Yu, J., Muzik, O., Kulterer, O. C., Fueger, B., Kifjak, D., Nakuz, T., Shin, H. M., Sima, A. K., Kitzmantl, D., Badawi, R. D., Nardo, L., Cherry, S. R., Spencer, B. A., Hacker, M., & Beyer, T. (2022). Fully Automated, Semantic Segmentation of Whole-Body18F-FDG PET/CT Images Based on Data-Centric Artificial Intelligence. In Journal of Nuclear Medicine (Vol. 63, Issue 12, pp. 1941–1948). Society of Nuclear Medicine. https://doi.org/10.2967/jnumed.122.264063


Info
titleTCIA Citation

Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F. (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository. In Journal of Digital Imaging (Vol. 26, Issue 6, pp. 1045–1057). Springer Science and Business Media LLC.https://doi.org/10.1007/s10278-013-9622-7

Other Publications Using This Data

TCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA's Helpdesk.


Localtab
titleVersions

Version 1 (Current): Updated

yyyy

2023/

mm

09/

dd

21

Data TypeDownload all or Query/FilterLicense

Images, (DICOM, 59 GB)



Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/140312957/Healthy%20Total%20Body%20CTs%20July%202023.tcia?api=v2



tcia-button-generator
labelSearch
urlhttps://nbia.cancerimagingarchive.net/nbia-search/?MinNumberOfStudiesCriteria=1&CollectionCriteria=Healthy-Total-Body-CTs



(Download requires the NBIA Data Retriever)

Tcia restricted license




Segmentations (NIfTI) & Organ Value spreadsheet (zip) 


Tcia button generator
url

Clinical data (CSV)

Segmentation Organ values
https://wiki.cancerimagingarchive.net/download/attachments/140312957/Healthy-Total-Body%20CTs%20NIfTI%20Segmentations%20and%20Segmentation%20Organ%20Values%20spreadsheet.zip?api=v2



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Clinical Data (.xlsx)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/140312957/
segmentation_organ_values
Healthy_Total_Body_CTs_Clinical_data%20v2.xlsx?api=v2



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