Localtab |
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active | true |
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title | Data Access |
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| Data AccessNote to curators! This macro is for collections that are restricted due to facial reconstruction possibility. Note to curators! This macro is for collections that are restricted because of a PI's embargo request General restricted license access |
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Note to curators! Only use the appropriate macro for your collection above, or the text below in the case of NCTN trials. It will need to be tailored with the correct NCT#.This is a limited access data set. To request access please register an account on the NCTN Data Archive. After logging in, use the "Request Data" link in the left side menu. Follow the on screen instructions, and enter NCT00352534enter NCT00392327 when asked which trial you want to request. In step 2 of the Create Request form, be sure to select “Imaging Data Requested”. Please contact NCINCTNDataArchive@mail.nih.gov for any questions about access requests. Data Type | Download all or Query/Filter | License |
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Images, Segmentations, and Radiation Therapy Structures/Doses/Plans AREN0533 Annotations -- Segmentations, Seed Points, and Negative Findings Assessments (DICOM, XX.X GB)<< latter two items only if DICOM SEG/RTSTRUCT/RTDOSE/PLAN exist >>
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(Download requires NBIA Data Retriever)tcia-cc-by-4 | nctn_withno_collab-license-only |
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| AREN0533 Annotation Metadata (CSV) | | Nctn_no_collab license only |
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| Tissue Slide Images (SVS, XX.X Original AREN0533 Images used to create Segmentations and Seed Points (DICOM, XXX GB) |
Tcia button generator |
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Tcia button generator |
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label | Search |
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| )tcia-restricted-license(Download requires Aspera pluginNBIA Data Retriever) | Nctn_no_collab license only |
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| Clinical data (CSVOriginal AREN0533 Images used to create Negative Assessment reports (DICOM, XXX GB) |
(Download requires NBIA Data Retriever) | Nctn_with_collab license only |
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Nctn_no_collab license only |
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Click the Versions tab for more info about data releases. Additional Resources for this DatasetNote to curators! Use this any time you are linking to NCI's IDC/GDC/PDC resources. The links below are examples and will need to be tailored to point to the specific dataset (see parameters in URLS). nci_crdcnctn-additional-resources |
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Note to curators! The link below is an example for NCTN trials and will need to be tailored to the proper URL for the corresponding data on the NCTN Data Archive. Nctn additional resources |
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Note to curators! Below are examples for what to do with other external resources/links that don't fit into the above categories. The following external resources have been made available by the data submitters. These are not hosted or supported by TCIA, but may be useful to researchers utilizing this collection. - Software / Code on Github
- Genomics data in DbGAP
- Genomics data in Gene Expression Omnibus
Third Party Analyses of this DatasetTCIA encourages the community to publish your analyses of our datasets. Below is a list of such third party analyses published using this Collection: <add links to TCIA Analysis Result DOIs here>
Collections Used in this Third Party AnalysisBelow is a list of the Collections used in these analyses: |
Localtab |
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title | Detailed Description |
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| Detailed DescriptionImage Statistics | Radiology Image Statistics | Pathology Image Statistics |
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Modalities |
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| Number of Patients |
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| Number of Studies |
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| Number of Series |
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| Number of Images |
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| Images Size (GB) |
<< Add any additional information that didn't fit or belong in the Summary section. >>Important information contained in the DICOM headers: - Anatomic Region Sequence (0x0008, 0x2218) was inserted containing CNS Segmentation Types as defined in: https://dicom.nema.org/medical/dicom/current/output/chtml/part16/sect_CID_7153.html. In cases where tumor spans multiple regions, multiple location codes were inserted. For example, if the tumor is centered in the parietal lobe, but also involves the frontal and temporal lobes, anatomical codes for all three locations were attached to the structure.
- Segmented Property Category Code Sequence (0x0062,0x0003) was inserted into DICOM SEG objects containing one of the following codes:
- (NCIt, C113842, "Enhancing Lesion")
- (NCIt, C81175, "Non-Enhancing Lesion")
- (SNOMED-CT, 14799000, "Neoplasm, Secondary")
- (SNOMED-CT, 79654002, "Edema")
- Tracking ID (0x0062,0x0020) and Tracking UID (0x0062,0x0021) tags were inserted for each segmented structure to enable longitudinal lesion tracking.
- A study time point description was inserted into the Clinical Trial Time Point ID (0x0012,0x0050) attribute to help identify each annotation in the context of the clinical trial assessment protocol. The time point description contains one of the following strings: pre-operative, post-operative, post-radiation, post-chemotherapy, or recurrence. Additionally, a Concept Name Code Sequence (0x0040, 0xA043) and Concept Code Sequence (0x0040,0xA168) were added to Acquisition Context Sequence (0x0040, 0x0555).The former defines a Time Point Type concept and latter is populated with one of the following concepts:
- (SNOMED-CT, 262068006, "Pre-operative")
- (SNOMED-CT, 262061000, "Post-operative")
- (SNOMED-CT, 264908009, "Post-radiation")
- (SNOMED-CT, 262502001, "Post-chemotherapy")
- (SNOMED-CT, 25173007, "Recurrent tumor (finding)")
- For reviewed studies with no radiologic findings, a "negative" DICOM SEG and/or RTSS file are provided. These files contain no segmentation or contour data, but still contain pertinent metadata in Clinical Trial Time Point ID, Acquisition Context Sequence, Anatomic Region Sequence, and Segmented Property Category Code Sequence. The primary motivation for providing these annotations is to capture the information that no radiologic findings (e.g. progression or new metastatic disease) were found during review.
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Localtab |
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title | Citations & Data Usage Policy |
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| Citations & Data Usage Policy Tcia limited license policy |
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Info |
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| DOI goes here. Create using Datacite with information from Collection Approval form |
Info |
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title | Publication Citation |
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| We ask on the proposal form if they have ONE traditional publication they'd like users to cite. |
Info |
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| Required acknowledgements only (ex:The CPTAC program requests that publications using data from this program...). If they just want to thank someone, that goes in the Acknowledgement section underneath the Summary. |
Info |
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| Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F. (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository. In Journal of Digital Imaging (Vol. 26, Issue 6, pp. 1045–1057). Springer Science and Business Media LLC.https://doi.org/10.1007/s10278-013-9622-7 |
Other Publications Using This DataTCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk. |
Localtab |
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| Version X (Current): Updated yyyy/mm/ddData Type | Download all or Query/Filter | License |
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Images, Segmentations, and Radiation Therapy Structures/Doses/Plans (DICOM, XX.X GB) << latter two items only if DICOM SEG/RTSTRUCT/RTDOSE/PLAN exist >> |
(Download requires the NBIA Data Retriever) | Nctn_with_collab license only |
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Nctn_no_collab license only |
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| Tissue Slide Images (SVS, XX.X GB) | | Nctn_with_collab license only |
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Nctn_no_collab license only |
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| Clinical data (CSV) | | Nctn_with_collab license only |
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Nctn_no_collab license only |
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<< One or two sentences about what you changed since last version. No note required for version 1. >> |
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