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CIP TCGA-GBM Informatics Initiative
The Cancer Imaging Program has begun multiple projects to collaborate with the academic community to encourage cross disciplinary research which utilizes the data provided in these resources. More information about ongoing projects in this area can be found on the CIP TCGA Radiology Initiative wiki page.
caBIG Tools for TCGA-GBM Analysis
Informatics software for use with this data has also been developed as part of the caBIG TCGA Enterprise Use-Case project. This caBIG enterprise use-case enables TCGA images stored in NBIA to be displayed on three different free and/or open source DICOM viewer workstations that possess annotation and markup capabilities based on Annotation Imaging Markup (AIM).
At present, the caBIG Imaging Workspace completed Phase I of this Enterprise Use-Case. ClearCanvas (Windows OS), Osirix (Mac) and XIP (caBIG open source/cross platform) were customized to allow retrieval of images from NBIA over the caGrid, markup by AIM standards, and storage back to an AIM-E Grid data service. More information can be found on the TCGA Radiology Project Phase I Homepage.
Data Access
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You can view and download these images on the Cancer Imaging Archive. You will need a user account to log in. Simply follow these steps:
- Navigate to https://cancerimagingarchive.net
- Request a user account if you don't have one
- Click the "Search Images" link in the center of the page
- Scroll down through the search criteria until you see the "Collections" section
- Select the "TCGA-GBM" check box
- Press "Submit"
This will return the full list of cases included in the collection. To download the associated DICOM images:
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