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CPTAC has been conducted in multiple phases. For their the phase 3 prospective data collection activities TCIA has partnered with CPTAC to host both the radiology and pathology imaging data generated by the project. The other data types will be hosted in separate databases managed by the CPTAC program. TCIA will provide links to these resources as they become publicly available.
CPTAC Phase 3 Histopathology and Radiology Imaging
Histopathology Imaging
Histopathology
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and
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A tutorial walk-through of the histopathology review system is available here.
Radiology Imaging
TCIA is also in the process of collecting radiology imaging from contracted CPTAC tissue sources sites. The imaging data will be made available on a quarterly release schedule. Data currently available includes:
Collection | Cancer Type | Location | Radiology Modalities | Radiology (Subjects) |
| Pathology (Subjects) | |||
Clear Cell Carcinoma | Kidney | CT |
| 220 | ||||
Cutaneous Melanoma | Skin | MR, CT, CR |
| 62 | |||
Glioblastoma Multiforme | Brain | CT, MR |
| 116 | |||
| CPTAC-HNSCC | Head and Neck Squamous Cell Carcinoma | Head-Neck | CT, SC |
| 22 |
| 99 | |||
Squamous Cell Carcinoma | Lung | CR, CT, DX, PT |
| 105 | |||
Adenocarcinoma | Lung | CT, MR, PT, CR |
| 165 | |||
Ductal Adenocarcinoma | Pancreas | CT, MR, DX, CR |
| 77 | |||
Corpus Endometrial Carcinoma | Uterus | CT, MR, PT, CR |
33
| 178 |
How to use the TCIA CPTAC Pathology Portal:
| View file | ||||
|---|---|---|---|---|
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CPTAC Phase 2 - TCGA Cancer Proteome Studies
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Images and Clinical Data Downloads
These subsets of radiology images have been saved as Shared Lists can be accessed using the following nameslinks:
The clinical data for these subjects can be found in these spreadsheets:
References
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Also: Identification of protein biomarkers in human serum using iTRAQ and shotgun mass spectrometry Methods Mol Biol. 2013;1061:291-307. doi: 10.1007/978-1-62703-589-7_18. Koutroukides TA1