Authors
Alberto Vargas, Erich Huang, Yulia Lakhman, Joe Ippolito, Priya Bhosale, Vincent Mellnick, Atul Shinagare, Maria Anello, Justin Kirby, Brenda Fevrier-Sullivan, John Freymann, Carl Jaffe, Evis Sala
Citation
Smith K, Clark K, Bennett W, Nolan T, Kirby J, Wolfsberger M, Moulton J, Vendt B, Freymann J. Radiology Data from The Cancer Genome Atlas Ovarian Cancer [TCGA-OV] collection. (2016). doi:10.7937/K9/TCIA.2016.NDO1MDFQ
Description
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This study was a multi-reader, multi-institutional, IRB-approved retrospective analysis of 93 HGSOC patients with abdominal and pelvic CT scans prior to primary debulking that were available through The Cancer Imaging Archive (TCIA). Eight radiologists from The Cancer Genome Atlas-Ovarian Cancer (TCGA-OV) Imaging Research Group developed and subsequently independently recorded the following CT features in each patient: primary ovarian mass(es) characteristics (if present), presence and distribution of peritoneal tumor spread, lymphadenopathy, and distant metastases. Inter-observer agreement for the CT features was assessed, as were associations of these features with time-to-disease progression (TTP) and CLOVAR subtypes and abilities of combinations of these features to predict TTP and CLOVAR subtypes. Results of analyzing this data are published in a manuscript
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titled Radiogenomics of High-Grade Serous Ovarian Cancer: Multi- Reader Multi-Institutional Study from The Cancer Genome Atlas-Ovarian Cancer (TCGA-OV) Imaging Research Group.
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title | Data Access |
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| Data Access Click the Download button to save a ".tcia" manifest file to your computer, which you must open with the NBIA Data Retriever Data Type | Download all or Query/Filter |
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Images (DICOM) | | Full Radiologist Assessments of Image Features (CSV) | | Consensus Radiologist Assessments of Image Features (CSV) | | Clinical data (CSV) | | Genomic sub-type data (CSV) | | Please contact help@cancerimagingarchive.net with any questions regarding usage. |
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title | Detailed Description |
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| Detailed Description
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title | Citations & Data Usage Policy |
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| Citations & Data Usage Policy Public collection license |
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Info |
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| Vargas, Alberto; Huang, Erich; Lakhman, Yulia; Ippolito, Joe; Bhosale, Priya; Mellnick, Vincent; Shinagare, Atul; Anello, Maria; Kirby, Justin; Fevrier-Sullivan, Brenda; Freymann, John; Jaffe, Carl; Sala, Evis,. (2016). Imaging Features, and Correlations with Genomic and Clinical Data from the TCGA Ovarian Radiology Research Group. The Cancer Imaging Archive. http://doi.org/10.7937/K9/TCIA.2016.PSJOXM47 |
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title | Publication Citation |
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| Vargas HA, Huang EP, Lakhman Y, Ippolito JE, Bhosale P, Mellnick V, Shinagare AB, Anello M, Kirby J, Fevrier-Sullivan B, Freymann J, Jaffe CC, Sala E. Radiogenomics of High-Grade Serous Ovarian Cancer: Multireader Multi-Institutional Study from the Cancer Genome Atlas Ovarian Cancer Imaging Research Group. Radiology. 2017 Jun 22:161870. doi: 10.1148/radiol.2017161870. (link) |
Info |
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| Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. (paper) |
Other Publications Using This Data TCIA maintains a list of publications that leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk. |
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| Version 1 (Current): 2016/08/02 Data Type | Download all or Query/Filter |
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Images (DICOM) | | Full Radiologist Assessments of Image Features (CSV) | | Consensus Radiologist Assessments of Image Features (CSV) | | Clinical data (CSV) | | Genomic sub-type data (CSV) | | |
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Special instructions:
A related paper is in the final stages of preparation for submission. Please restrict page access to CIP/UAMS for now and I will make it public when the paper is published.
Dataset Download
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TCGA Ovarian Research Group Data (no URL link yet?)
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