Localtab |
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active | true |
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title | Data Access |
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| Data AccessData Type | Download all or Query/Filter | License |
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Images (DICOM, 65.9 GB) |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/33948258/TCIA-CPTAC-PDA_v14_20230818.tcia?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://www.cancerimagingarchive.net/nbia-search/?CollectionCriteria=CPTAC-PDA |
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(Download requires the NBIA Data Retriever) | | Tissue Slide Images (SVS, 88 GB) |
Tcia button generator |
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url | https://faspex.cancerimagingarchive.net/aspera/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6IjY3NSIsInBhc3Njb2RlIjoiMjJlNmRjNDcwZGMyYjRmZGMzYjc4NmMyYzE1MTEzYzc3OTY5YWRjMSIsInBhY2thZ2VfaWQiOiI2NzUiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0= |
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Tcia button generator |
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label | Search |
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url | https://pathdb.cancerimagingarchive.net/eaglescope/dist/?configurl=/system/files/collectionmetadata/202208/cptac_metadata_page_0.json&filterState=[{"id":"Tumor","title":"Tumor","field":"Tumor","operation":"eq","values":"AML"}] |
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(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) | |
Click the Versions tab for more info about data releases. Nci_crdc additional resources |
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Third Party Analyses of this DatasetTCIA encourages the community to publish your analyses of our datasets. Below is a list of such third party analyses published using this Collection: |
Localtab |
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title | Detailed Description |
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| Detailed Description
| | Pathology Image Statistics |
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Modalities | CT, MR, PT, US | Pathology | Number of Participants | 108 | 168 | Number of Studies | 132 | N/A | Number of Series | 1,121 | N/A | Number of Images | 130,628 | 557 | Images Size (GB) | 66.1 GB | 88 | Accessing CPTAC publication cohortsAll CPTAC cohorts are released as either a single combined cohort, or split into Discovery and Confirmatory where applicable. In the case of CPTAC-PDA there was a "Discovery Cohort" release. Images associated with these cases can be downloaded using the following links: Accessing the Proteomic & Genomic Clinical DataTo access/download the clinical data on the Proteomic Data Commons (PDC) and Genomic Data Commons (GDC), once you have identified the data of your interest, move to the 'Clinical' tab on the browse page. Select the checkbox to select a specific row, all rows on the page or all pages and click the export clinical manifest button in CSV or TSV format on the GDC, or TSV or JSON format on the PDC. A Note about TCIA and CPTAC Subject Identifiers and DatesSubject Identifiers: A subject with radiology and pathology images stored in TCIA is identified with a de-identified project Patient ID that is identical to the Patient ID of the same subject with clinical, proteomic, and/or genomic data stored in other CPTAC databases and web sites. Dates: The radiology imaging data is in DICOM format. To provide temporal context information aligned with events in the clinical data set for each patient, TCIA has inserted information in DICOM tag (0012,0050) Clinical Trial Time Point ID. This DICOM tag contains the number of days from the date the patient was initially diagnosed pathologically with the disease to the date of the scan. E.g. a scan acquired 3 days before the diagnosis would contain the value -3. A follow up scan acquired 90 days after diagnosis would contain the value 90. The DICOM date tags (i.e. birth dates, imaging study dates, etc.) are modified per TCIA's standard process which offsets them by a random number of days. The offset is a number of days between 3 and 10 years prior to the real date that is consistent for each TCIA image-submitting site and collection, but that varies among sites and among collections from the same site. Thus, the number of days between a subject’s longitudinal imaging studies are accurately preserved when more than one study has been archived while still meeting HIPAA requirements. |
Localtab |
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title | Citations & Data Usage Policy |
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| Citations & Data Usage Policy Tcia limited license policy |
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Info |
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| National Cancer Institute Clinical Proteomic Tumor Analysis Consortium (CPTAC). (2018). The Clinical Proteomic Tumor Analysis Consortium Pancreatic Ductal Adenocarcinoma Collection (CPTAC-PDA) (Version 14) [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/K9/TCIA.2018.SC20FO18 |
Info |
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| The CPTAC program requests that publications using data from this program include the following statement: “Data used in this publication were generated by the National Cancer Institute Clinical Proteomic Tumor Analysis Consortium (CPTAC).” |
Info |
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| Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F. (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository. In Journal of Digital Imaging (Vol. 26, Issue 6, pp. 1045–1057). Springer Science and Business Media LLC. https://doi.org/10.1007/s10278-013-9622-7 |
Other Publications Using This DataTCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add please contact TCIA's Helpdesk. |
Localtab |
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| Version 14 (current): Updated 2023/08/18Data Type | Download all or Query/Filter | License |
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Images (DICOM, 65.9 GB) |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/33948258/TCIA-CPTAC-PDA_v14_20230818.tcia?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://www.cancerimagingarchive.net/nbia-search/?CollectionCriteria=CPTAC-PDA |
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(Download requires the NBIA Data Retriever) | | Tissue Slide Images (SVS, 88 GB) |
Tcia button generator |
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url | https://faspex.cancerimagingarchive.net/aspera/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6IjY3NSIsInBhc3Njb2RlIjoiMjJlNmRjNDcwZGMyYjRmZGMzYjc4NmMyYzE1MTEzYzc3OTY5YWRjMSIsInBhY2thZ2VfaWQiOiI2NzUiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0= |
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Tcia button generator |
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label | Search |
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url | https://pathdb.cancerimagingarchive.net/eaglescope/dist/?configurl=/system/files/collectionmetadata/202208/cptac_metadata_page_0.json&filterState=[{"id":"Tumor","title":"Tumor","field":"Tumor","operation":"eq","values":"AML"}] |
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(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) | |
Added DICOM imaging. Version 13: Updated 2023/02/24Data Type | Download all or Query/Filter |
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Images (DICOM, 65.9 GB) |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/33948258/TCIA-CPTAC-PDA_v13_20230224.tcia?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://www.cancerimagingarchive.net/nbia-search/?CollectionCriteria=CPTAC-PDA |
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(Download requires the NBIA Data Retriever) | Tissue Slide Images (SVS, 88 GB) |
Tcia button generator |
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url | https://faspex.cancerimagingarchive.net/aspera/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6IjY3NSIsInBhc3Njb2RlIjoiMjJlNmRjNDcwZGMyYjRmZGMzYjc4NmMyYzE1MTEzYzc3OTY5YWRjMSIsInBhY2thZ2VfaWQiOiI2NzUiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0= |
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Tcia button generator |
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label | Search |
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url | https://pathdb.cancerimagingarchive.net/eaglescope/dist/?configurl=/system/files/collectionmetadata/202208/cptac_metadata_page_0.json&filterState=[{"id":"Tumor","title":"Tumor","field":"Tumor","operation":"eq","values":"AML"}] |
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(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) |
Radiology modality data cleanup to remove extraneous scans. Version 12: Updated 2023/02/16Data Type | Download all or Query/Filter |
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Images (DICOM, 66.3 GB) |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/33948258/TCIA-CPTAC-PDA_v12_20230216.tcia?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://www.cancerimagingarchive.net/nbia-search/?CollectionCriteria=CPTAC-PDA |
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(Download requires the NBIA Data Retriever) | Tissue Slide Images (SVS, 88 GB) |
Tcia button generator |
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url | https://faspex.cancerimagingarchive.net/aspera/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6IjY3NSIsInBhc3Njb2RlIjoiMjJlNmRjNDcwZGMyYjRmZGMzYjc4NmMyYzE1MTEzYzc3OTY5YWRjMSIsInBhY2thZ2VfaWQiOiI2NzUiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0= |
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Tcia button generator |
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label | Search |
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url | https://pathdb.cancerimagingarchive.net/eaglescope/dist/?configurl=/system/files/collectionmetadata/202208/cptac_metadata_page_0.json&filterState=[{"id":"Tumor","title":"Tumor","field":"Tumor","operation":"eq","values":"AML"}] |
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(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) |
Added radiology cases from one new site. Version 11: Updated 2021/02/04Data Type | Download all or Query/Filter |
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Images (DICOM, 50.8 GB) |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/33948258/TCIA-CPTAC-PDA_v10_20200204.tcia?api=v2 |
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| Tissue Slide Images (SVS, 88 GB) | Tcia button generator |
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url | https://faspex.cancerimagingarchive.net/aspera/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6IjY3NSIsInBhc3Njb2RlIjoiMjJlNmRjNDcwZGMyYjRmZGMzYjc4NmMyYzE1MTEzYzc3OTY5YWRjMSIsInBhY2thZ2VfaWQiOiI2NzUiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0= |
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Tcia button generator |
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label | Search |
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url | https://cancerimagingarchive.net/datascope/cptac/home/?filter={%22Image_Available%22:%5B%22Yes%22%5D,%22Tumor%22:%5B%22PDA%22%5D |
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| Proteomics (web) |
Tcia button generator |
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label | Search |
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url | https://proteomics.cancer.gov/data-portal |
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Version 10 : Updated 2020/09/03Data Type | Download all or Query/Filter |
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Images (DICOM, 37 GB) |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/33948258/TCIA-CPTAC-PDA_v9_20200331.tcia?api=v2 |
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| Tissue Slide Images (SVS, 88 GB) |
Tcia button generator |
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url | https://faspex.cancerimagingarchive.net/aspera/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6IjY3NSIsInBhc3Njb2RlIjoiMjJlNmRjNDcwZGMyYjRmZGMzYjc4NmMyYzE1MTEzYzc3OTY5YWRjMSIsInBhY2thZ2VfaWQiOiI2NzUiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0= |
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Tcia button generator |
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label | Search |
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url | https://cancerimagingarchive.net/datascope/cptac/home/?filter={%22Image_Available%22:%5B%22Yes%22%5D,%22Tumor%22:%5B%22PDA%22%5D |
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| Proteomics (web) |
Tcia button generator |
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label | Search |
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url | https://proteomics.cancer.gov/data-portal |
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Changed to new Aspera download link for histopathology slides. Version 9: Updated 2020/03/31
Data Type | Download all or Query/Filter |
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Images (DICOM, 37 GB) |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/33948258/TCIA-CPTAC-PDA_v9_20200331.tcia?api=v2 |
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| Tissue Slide Images (SVS, 88 GB) |
Tcia button generator |
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label | Search |
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url | https://cancerimagingarchive.net/datascope/cptac/home/?filter={%22Image_Available%22:%5B%22Yes%22%5D,%22Tumor%22:%5B%22PDA%22%5D |
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| Proteomics (web) |
Tcia button generator |
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label | Search |
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url | https://proteomics.cancer.gov/data-portal |
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Added 6 radiology subjects Version 8: Updated 2019/12/16
Data Type | Download all or Query/Filter |
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Images (DICOM, 33.5 GB) |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/33948258/TCIA_CPTAC-PDA-batch8-Dec2019.tcia?api=v2 |
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| Tissue Slide Images (SVS, 88 GB) |
Tcia button generator |
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label | Search |
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url | https://cancerimagingarchive.net/datascope/cptac/home/?filter={%22Image_Available%22:%5B%22Yes%22%5D,%22Tumor%22:%5B%22PDA%22%5D |
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| Proteomics (web) |
Tcia button generator |
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label | Search |
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url | https://proteomics.cancer.gov/data-portal |
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Added 1 pathology and 6 new radiology subjects Version 7 : Updated 2019/09/30
Data Type | Download all or Query/Filter |
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Images (DICOM, 31.8 GB) |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/33948258/TCIA_CPTAC-PDA-batch7-Sep2019.tcia?api=v2 |
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| Tissue Slide Images (SVS, 88 GB) |
Tcia button generator |
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label | Search |
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url | https://cancerimagingarchive.net/datascope/cptac/home/?filter={%22Image_Available%22:%5B%22Yes%22%5D,%22Tumor%22:%5B%22PDA%22%5D |
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| Proteomics (web) | Tcia button generator |
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label | Search |
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url | https://proteomics.cancer.gov/data-portal |
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Added new subjects. Version 6: Updated 2019/06/30
Data Type | Download all or Query/Filter |
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Images (DICOM, 25.6 GB) |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/33948258/TCIA_CPTAC-PDA-batch6-June2019.tcia?api=v2 |
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| Tissue Slide Images (SVS, 86.4 GB) |
Tcia button generator |
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label | Search |
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url | https://cancerimagingarchive.net/datascope/cptac/home/?filter={%22Image_Available%22:%5B%22Yes%22%5D,%22Tumor%22:%5B%22PDA%22%5D |
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| Proteomics (web) |
Tcia button generator |
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label | Search |
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url | https://proteomics.cancer.gov/data-portal |
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Version 5 : Updated 2019/03/31
Data Type | Download all or Query/Filter |
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Images (DICOM, 23.8 GB) |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/33948258/CPTAC-PDA_batch5_Mar2019.tcia?api=v2 |
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| Tissue Slide Images (web) |
Tcia button generator |
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label | Search |
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url | https://cancerimagingarchive.net/datascope/cptac/home/?filter={%22Image_Available%22:%5B%22Yes%22%5D,%22Tumor%22:%5B%22PDA%22%5D |
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| Proteomics (web) |
Tcia button generator |
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label | Search |
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url | https://proteomics.cancer.gov/data-portal |
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Added new subjects. Version 4 : Updated 2018/10/24
Data Type | Download all or Query/Filter |
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Images (DICOM, 21.8 GB) |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/33948258/TCIA_CPTAC-PDA-Batch4-2018-10-24.tcia?api=v2 |
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| Tissue Slide Images (web) |
Tcia button generator |
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label | Search |
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url | https://cancerimagingarchive.net/datascope/cptac/home/?filter={%22Image_Available%22:%5B%22Yes%22%5D,%22Tumor%22:%5B%22PDA%22%5D |
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| Proteomics (web) |
Tcia button generator |
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label | Search |
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url | https://proteomics.cancer.gov/data-portal |
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Added new subjects. Version 3: Updated 2018/06/30
Data Type | Download all or Query/Filter |
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Images (DICOM, 21.8 GB) |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/33948258/TCIA_CPTAC-PDA-2018-06-30-doiJNLP-9S7qzV6o.tcia?api=v2 |
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| Tissue Slide Images (web) |
Tcia button generator |
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label | Search |
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url | https://cancerimagingarchive.net/datascope/cptac/home/?filter={%22Image_Available%22:%5B%22Yes%22%5D,%22Tumor%22:%5B%22PDA%22%5D |
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| Proteomics (web) |
Tcia button generator |
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label | Search |
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url | https://proteomics.cancer.gov/data-portal |
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Added new subjects. Version 2: Updated 2018/04/26
Data Type | Download all or Query/Filter |
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Images (DICOM, 21.4 GB) |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/33948258/TCIA_CPTAC-PDA-B2-2018-05-01-v1-doiJNLP-vc944gFw.tcia?api=v2 |
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| Tissue Slide Images (web) |
Tcia button generator |
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label | Search |
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url | https://cancerimagingarchive.net/datascope/cptac/home/?filter={%22Image_Available%22:%5B%22Yes%22%5D,%22Tumor%22:%5B%22PDA%22%5D |
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| Proteomics (web) |
Tcia button generator |
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label | Search |
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url | https://proteomics.cancer.gov/data-portal |
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Added new subjects. Version 1: Updated 2018/01/10
Data Type | Download all or Query/Filter |
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Images (DICOM, 4.38 GB) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/33948258/CPTAC-PDA-B1-doiJNLP-iGI3gITO.tcia?api=v2 |
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| Tissue Slide Images (web) |
Tcia button generator |
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label | Search |
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url | https://cancerimagingarchive.net/datascope/cptac/home/?filter={%22Image_Available%22:%5B%22Yes%22%5D,%22Tumor%22:%5B%22PDA%22%5D |
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| Proteomics (web) |
Tcia button generator |
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label | Search |
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url | https://proteomics.cancer.gov/data-portal |
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