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Collection | Cancer Type | Location | Radiology Modalities | Radiology (Subjects) | Pathology (Subjects) | ||
| CPTAC-AML | Acute Myeloid Leukemia | -- | -- | 38 | |||
Clear Cell Carcinoma | Kidney | CT | 220222 | ||||
Cutaneous Melanoma | Skin | MR, CT, CR | 6273 | ||||
Glioblastoma Multiforme | Brain | CT, MR | 116120 | ||||
| CPTAC-HNSCC | Head and Neck Squamous Cell Carcinoma | Head-Neck | CT, SC | 2229 | 99110 | ||
Squamous Cell Carcinoma | Lung | CR, CT, DX, PT | 105114 | ||||
Adenocarcinoma | Lung | CT, MR, PT, CR | 165 | ||||
Ductal Adenocarcinoma | Pancreas | CT, MR, DX, CR | 85 | ||||
| CPTAC-SAR | Sarcomas | CT,MR | 3 | 7177 | |||
Corpus Endometrial Carcinoma | Uterus | CT, MR, PT, CR | 178181 |
Quick introduction to the TCIA CPTAC Pathology Portal:
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An early CPTAC publication which reports on a more comprehensive collection of cases from those TCGA tumor data collections (BRCA and OV) can be found at: “Comprehensive quantitative analysis of ovarian and breast cancer tumor peptidomes”. Xu Z, et al., J Proteome Res. 2015 Jan 2;14(1):422-33. doi: 10.1021/pr500840w.
An excellent review of proteomic biomarkers is the publication: "Proteomics in cancer biomarkers discovery: challenges and applications." Sallam RM1. Dis Markers. 2015;2015:321370. doi: 10.1155/2015/321370.
Also: Identification of protein biomarkers in human serum using iTRAQ and shotgun mass spectrometry Methods Mol Biol. 2013;1061:291-307. doi: 10.1007/978-1-62703-589-7_18. Koutroukides TA1