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title | Data Access |
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| Data AccessClick the Download button to save a ".tcia" manifest file to your computer, which you must open with the NBIA Data Retriever. Click the Search button to open our Data Portal, where you can browse the data collection and/or download a subset of its contents. Data Type | Download all or Query/Filter |
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Images (.bmp, 10.44 GB) | | Supplemental Data (csv, pdf) | |
Please note that Box has a 15GB download limit, so you will need to download images in batches. Click the Versions tab for more info about data releases. |
Localtab |
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title | Detailed Description |
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| Detailed Description | |
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Modalities | Pathology | Number of Patients | 118 | Number of Studies | 118 | Number of Images | 15,114 | Images Size (GB) | 10.44 |
Challenge is split into 3 separate phases:Train set composition: Total subjects: 73, ALL (cancer): 47, Normal: 26 Total cell images: 10,661, ALL(cancer): 7272, Normal: 3389
Preliminary test set composition: Total subjects: 28, ALL (cancer): 13, Normal: 15 Total cell images: 1867, ALL(cancer): 1219, Normal: 648 Final test set composition:
Total subjects: 15, ALL (cancer): 9, Normal: 8 Total cell images: 2586, ALL(cancer): 1761, Normal: 825
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Localtab |
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title | Citations & Data Usage Policy |
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| Citations & Data Usage PolicyAdd any special restrictions in here. These collections are freely available to browse, download, and use for commercial, scientific and educational purposes as outlined in the Creative Commons Attribution 3.0 Unported License. Questions may be directed to help@cancerimagingarchive.net. Please be sure to acknowledge both this data set and TCIA in publications by including the following citations in your work: Info |
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| DOI goes here. Create using pubhub with information from Collection Approval form |
Info |
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title | Publication Citation |
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| - Anubha Gupta, Rahul Duggal, Ritu Gupta, Lalit Kumar, Nisarg Thakkar, and Devprakash Satpathy, “GCTI-SN: Geometry-Inspired Chemical and Tissue Invariant Stain Normalization of Microscopic Medical Images,”, under review.
- Ritu Gupta, Pramit Mallick, Rahul Duggal, Anubha Gupta, and Ojaswa Sharma, "Stain Color Normalization and Segmentation of Plasma Cells in Microscopic Images as a Prelude to Development of Computer Assisted Automated Disease Diagnostic Tool in Multiple Myeloma," 16th International Myeloma Workshop (IMW), India, March 2017.
- Rahul Duggal, Anubha Gupta, Ritu Gupta, Manya Wadhwa, and Chirag Ahuja, “Overlapping Cell Nuclei Segmentation in Microscopic Images UsingDeep Belief Networks,” Indian Conference on Computer Vision, Graphics and Image Processing (ICVGIP), India, December 2016.
- Rahul Duggal, Anubha Gupta, and Ritu Gupta, “Segmentation of overlapping/touching white blood cell nuclei using artificial neural networks,” CME Series on Hemato-Oncopathology, All India Institute of Medical Sciences (AIIMS), New Delhi, India, July 2016.
- Rahul Duggal, Anubha Gupta, Ritu Gupta, and Pramit Mallick, "SD-Layer: Stain Deconvolutional Layer for CNNs in Medical Microscopic Imaging," In: Descoteaux M., Maier-Hein L., Franz A., Jannin P., Collins D., Duchesne S. (eds) Medical Image Computing and Computer-Assisted Intervention − MICCAI 2017, MICCAI 2017. Lecture Notes in Computer Science, Part III, LNCS 10435, pp. 435–443. Springer, Cham. DOI: https://doi.org/10.1007/978-3-319-66179-7_50.
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Info |
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| Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI: 10.1007/s10278-013-9622-7 |
Other Publications Using This DataTCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk. |
Localtab |
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| Version 1 (Current): Updated 2019/03/26Data Type | Download all or Query/Filter |
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Images (.bmp, 10.44 GB) | | Other (cvs, pdf) | |
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